myRT

myRT report for GCA_001555215.1_ASM155521v1

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Seq: LRYZ01000004.1 Pseudomonas aeruginosa strain AU24156 NODE_13_length_180652_cov_7.55676_ID_25, whole genome shotgun sequence (180652 bp)
Overview 1 RT 1: 6638-14804 bp Neighborhood of RT #1 [6638, 15010] DUF262 YeeA RVT-UG5 AAA_15 AAA_15 Feature: gene Location: 6638-8509 bp Ori: KXD54514.1 Feature: domain Description: DUF262 Location: 6686-7454 bp Feature: domain Description: DUF262 Location: 6686-7454 bp Feature: gene Location: 8513-9439 bp Ori: KXD54515.1 Feature: domain Description: YeeA Location: 8600-9305 bp Feature: domain Description: YeeA Location: 8600-9305 bp Feature: gene Location: 10294-13314 bp Ori: KXD54516.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 10789-11260 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 0789-1 1 260 bp Feature: gene Location: 13311-13868 bp Feature: gene Location: 13868-15010 bp Ori: KXD54518.1 Feature: domain Description: AAA_15 Location: 13871-14012 bp Feature: domain Description: AAA_1 5 Location: 1 3871 -1 401 2 bp Feature: domain Description: AAA_15 Location: 14693-14804 bp Feature: domain Description: AAA_1 5 Location: 1 4693-1 4804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_15 (pfam13175)

Seq: LRYZ01000056.1 Pseudomonas aeruginosa strain AU24156 NODE_7_length_281948_cov_7.57395_ID_13, whole genome shotgun sequence (281948 bp)
Overview 1 RT 1: 34028-39715 bp Neighborhood of RT #1 [34028, 39715] HDOD YgfZ RVT_N RVT-GII YkfC HNH SdhE Feature: gene Location: 34028-34864 bp Ori: KXD43044.1 Feature: domain Description: HDOD Location: 34031-34859 bp Feature: domain Description: HDOD Location: 34031-34859 bp Feature: gene Location: 34965-35909 bp Ori: KXD43045.1 Feature: domain Description: YgfZ Location: 34974-35874 bp Feature: domain Description: YgfZ Location: 34974-35874 bp Feature: gene Location: 37229-38935 bp Ori: KXD43046.1 Feature: domain Description: RVT_N Location: 37286-37529 bp Feature: domain Description: RVT_N Location: 372 86-3752 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37574-38210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37574-382 10 bp Feature: domain Description: YkfC Location: 38408-38564 bp Feature: domain Description: YkfC Location: 38408-38564 bp Feature: domain Description: HNH Note: nucleases Location: 38747-38885 bp Feature: domain Description: HNH Note: nucleases Location: 38747-38885 bp Feature: gene Location: 39025-39279 bp Ori: KXD43047.1 Feature: domain Description: SdhE Location: 39031-39271 bp Feature: domain Description: SdhE Location: 39031-392 71 bp Feature: gene Location: 39263-39715 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)