myRT

myRT report for GCA_001555225.1_ASM155522v1

Download annotations/find similar RTs

Seq: LRZA01000023.1 Pseudomonas aeruginosa strain AU7198 NODE_2_length_233138_cov_5.51861_ID_3, whole genome shotgun sequence (233138 bp)
Overview 1 RT 1: 133405-144651 bp 2 RT 2: 160910-169734 bp Neighborhood of RT #1 [133405, 144653] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160910, 169763] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133405-134175 bp Ori: KXD57273.1 Feature: domain Description: NERD Location: 133504-133837 bp Feature: domain Description: NERD Location: 1 33504-1 33837 bp Feature: domain Description: zf-C4_Topoisom Location: 134056-134170 bp Feature: domain Description: zf-C4_Topoisom Location: 1 34056-1 341 70 bp Feature: gene Location: 134346-135467 bp Ori: KXD57274.1 Feature: domain Description: COG3177 Location: 134364-135456 bp Feature: domain Description: COG31 77 Location: 1 34364-1 35456 bp Feature: gene Location: 136190-137875 bp Ori: KXD57275.1 Feature: domain Description: RVT_N Location: 136247-136487 bp Feature: domain Description: RVT_N Location: 1 36247-1 36487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136535-137171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 36535-1 371 71 bp Feature: domain Description: GIIM Note: maturase Location: 137225-137456 bp Feature: domain Description: GIIM Note: maturase Location: 1 37225-1 37456 bp Feature: domain Description: HNH Note: nucleases Location: 137708-137846 bp Feature: domain Description: HNH Note: nucleases Location: 1 37708-1 37846 bp Feature: gene Location: 138956-142693 bp Ori: KXD57276.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 139064-139721 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 39064-1 39721 bp Feature: domain Description: PRK09776 Location: 139934-140405 bp Feature: domain Description: PRK09776 Location: 1 39934-1 40405 bp Feature: domain Description: PAS Location: 140462-140987 bp Feature: domain Description: PAS Location: 1 40462-1 40987 bp Feature: domain Description: PRK10060 Location: 140999-142643 bp Feature: domain Description: PRK1 0060 Location: 1 40999-1 42643 bp Feature: gene Location: 142800-144653 bp Ori: KXD57277.1 Feature: domain Description: PRK05658 Location: 142812-144651 bp Feature: domain Description: PRK05658 Location: 1 4281 2-1 44651 bp Feature: gene Location: 160910-162202 bp Ori: KXD57295.1 Feature: domain Description: PRK10770 Location: 161000-162194 bp Feature: domain Description: PRK1 0770 Location: 1 61 000-1 621 94 bp Feature: gene Location: 162183-164957 bp Ori: KXD57296.1 Feature: domain Description: LptD Location: 162378-164943 bp Feature: domain Description: LptD Location: 1 62378-1 64943 bp Feature: gene Location: 165090-166802 bp Ori: KXD57297.1 Feature: domain Description: RVT_N Location: 165147-165390 bp Feature: domain Description: RVT_N Location: 1 651 47-1 65390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165435-166071 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 65435-1 66071 bp Feature: domain Description: YkfC Location: 166278-166431 bp Feature: domain Description: YkfC Location: 1 66278-1 66431 bp Feature: domain Description: HNH Note: nucleases Location: 166608-166746 bp Feature: domain Description: HNH Note: nucleases Location: 1 66608-1 66746 bp Feature: gene Location: 168076-169092 bp Ori: KXD57298.1 Feature: domain Description: COG3178 Location: 168079-169078 bp Feature: domain Description: COG31 78 Location: 1 68079-1 69078 bp Feature: gene Location: 169089-169763 bp Ori: KXD57299.1 Feature: domain Description: NTP_transferase_like_1 Location: 169095-169734 bp Feature: domain Description: NTP_transferase_like_1 Location: 1 69095-1 69734 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: LRZA01000040.1 Pseudomonas aeruginosa strain AU7198 NODE_45_length_52965_cov_5.35291_ID_89, whole genome shotgun sequence (52965 bp)
Overview 1 RT 1: 184-6428 bp Neighborhood of RT #1 [184, 6715] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 184-2664 bp Ori: KXD51261.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 187-616 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 187-616 bp Feature: domain Description: nitrilase Location: 1975-2560 bp Feature: domain Description: nitrilase Location: 1975-2 560 bp Feature: gene Location: 3034-4026 bp Ori: KXD51262.1 Feature: domain Description: COG4127 Location: 3040-4015 bp Feature: domain Description: COG412 7 Location: 3040-4015 bp Feature: gene Location: 4964-6715 bp Ori: KXD51263.1 Feature: domain Description: restrict_AAA_1 Location: 4967-5714 bp Feature: domain Description: restrict_AAA_1 Location: 4967-5714 bp Feature: domain Description: restrict_AAA_1 Location: 6041-6428 bp Feature: domain Description: restrict_AAA_1 Location: 6041-642 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)