myRT

myRT report for GCA_001555335.1_ASM155533v1

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Seq: LSAD01000044.1 Pseudomonas aeruginosa strain AU10756 NODE_6_length_411606_cov_9.07234_ID_11, whole genome shotgun sequence (411606 bp)
Overview 1 RT 1: 329715-340021 bp Neighborhood of RT #1 [329715, 340023] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 329715-330836 bp Feature: domain Description: COG3177 Location: 329733-330825 bp Feature: domain Description: COG31 77 Location: 329733-330825 bp Feature: gene Location: 331095-331232 bp Feature: gene Location: 331560-333245 bp Feature: RT Description: RVT_N Location: 331617-331857 bp Feature: RT Description: RVT_N Location: 331 61 7-331 857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331905-332541 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 905-332541 bp Feature: domain Description: GIIM Note: maturase Location: 332595-332826 bp Feature: domain Description: GIIM Note: maturase Location: 332595-332826 bp Feature: domain Description: HNH Note: nucleases Location: 333078-333216 bp Feature: domain Description: HNH Note: nucleases Location: 333078-33321 6 bp Feature: gene Location: 334326-338063 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 334434-335091 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 334434-335091 bp Feature: domain Description: PRK09776 Location: 335304-335775 bp Feature: domain Description: PRK09776 Location: 335304-335775 bp Feature: domain Description: PAS Location: 335832-336357 bp Feature: domain Description: PAS Location: 335832-336357 bp Feature: domain Description: PRK10060 Location: 336366-338013 bp Feature: domain Description: PRK1 0060 Location: 336366-33801 3 bp Feature: gene Location: 338170-340023 bp Feature: domain Description: PRK05658 Location: 338182-340021 bp Feature: domain Description: PRK05658 Location: 3381 82-340021 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)