myRT

myRT report for GCA_001555375.1_ASM155537v1

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Seq: LSAE01000011.1 Pseudomonas aeruginosa strain AU20671 NODE_1_length_447668_cov_8.53639_ID_1, whole genome shotgun sequence (447668 bp)
Overview 1 RT 1: 365611-375917 bp Neighborhood of RT #1 [365611, 375919] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 365611-366732 bp Feature: domain Description: COG3177 Location: 365629-366721 bp Feature: domain Description: COG31 77 Location: 365629-366721 bp Feature: gene Location: 366991-367128 bp Feature: gene Location: 367456-369141 bp Feature: RT Description: RVT_N Location: 367513-367753 bp Feature: RT Description: RVT_N Location: 36751 3-367753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367801-368437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 367801 -368437 bp Feature: domain Description: GIIM Note: maturase Location: 368491-368722 bp Feature: domain Description: GIIM Note: maturase Location: 368491 -368722 bp Feature: domain Description: HNH Note: nucleases Location: 368974-369112 bp Feature: domain Description: HNH Note: nucleases Location: 368974-3691 1 2 bp Feature: gene Location: 370222-373959 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 370330-370987 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 370330-370987 bp Feature: domain Description: PRK09776 Location: 371200-371671 bp Feature: domain Description: PRK09776 Location: 371 200-371 671 bp Feature: domain Description: PAS Location: 371713-372253 bp Feature: domain Description: PAS Location: 371 71 3-372253 bp Feature: domain Description: PRK10060 Location: 372262-373909 bp Feature: domain Description: PRK1 0060 Location: 372262-373909 bp Feature: gene Location: 374066-375919 bp Feature: domain Description: PRK05658 Location: 374078-375917 bp Feature: domain Description: PRK05658 Location: 374078-37591 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)