myRT

myRT report for GCA_001555395.1_ASM155539v1

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Seq: LSAF01000040.1 Pseudomonas aeruginosa strain AU24807 NODE_3_length_356455_cov_7.84992_ID_5, whole genome shotgun sequence (356455 bp)
Overview 1 RT 1: 274400-284706 bp Neighborhood of RT #1 [274400, 284708] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 274400-275521 bp Feature: domain Description: COG3177 Location: 274418-275510 bp Feature: domain Description: COG31 77 Location: 27441 8-27551 0 bp Feature: gene Location: 275780-275917 bp Feature: gene Location: 276245-277930 bp Feature: RT Description: RVT_N Location: 276302-276542 bp Feature: RT Description: RVT_N Location: 276302-276542 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276590-277226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 276590-277226 bp Feature: domain Description: GIIM Note: maturase Location: 277280-277511 bp Feature: domain Description: GIIM Note: maturase Location: 277280-27751 1 bp Feature: domain Description: HNH Note: nucleases Location: 277763-277901 bp Feature: domain Description: HNH Note: nucleases Location: 277763-277901 bp Feature: gene Location: 279011-282748 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 279119-279776 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2791 1 9-279776 bp Feature: domain Description: PRK09776 Location: 279989-280460 bp Feature: domain Description: PRK09776 Location: 279989-280460 bp Feature: domain Description: PAS Location: 280517-281042 bp Feature: domain Description: PAS Location: 28051 7-281 042 bp Feature: domain Description: PRK10060 Location: 281051-282698 bp Feature: domain Description: PRK1 0060 Location: 281 051 -282698 bp Feature: gene Location: 282855-284708 bp Feature: domain Description: PRK05658 Location: 282867-284706 bp Feature: domain Description: PRK05658 Location: 282867-284706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)