myRT

myRT report for GCA_001555475.1_ASM155547v1

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Seq: LSBM01000339.1 Rhodococcus sp. SC4 SC4_contig_93, whole genome shotgun sequence (126103 bp)
Overview 1 RT 1: 21844-26341 bp Neighborhood of RT #1 [21844, 26346] NfsA_FRP SDR_c RVT-Retrons TIGR00004 GlnQ Feature: gene Location: 21844-22677 bp Feature: domain Description: NfsA_FRP Location: 21934-22600 bp Feature: domain Description: NfsA_FRP Location: 21 934-22600 bp Feature: gene Location: 22849-23604 bp Feature: domain Description: SDR_c Location: 22882-23542 bp Feature: domain Description: SDR_c Location: 22882-23542 bp Feature: gene Location: 23617-24837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24001-24595 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24001 -24595 bp Feature: gene Location: 25140-25523 bp Feature: domain Description: TIGR00004 Location: 25152-25509 bp Feature: domain Description: TIGR00004 Location: 251 52-25509 bp Feature: gene Location: 25582-26346 bp Feature: domain Description: GlnQ Location: 25597-26341 bp Feature: domain Description: GlnQ Location: 25597-26341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NfsA_FRP, SDR_c (cd05233), RVT-Retrons, TIGR00004 (reactive intermediate/imine deaminase), GlnQ (COG1126)

Seq: LSBM01000316.1 Rhodococcus sp. SC4 SC4_contig_72, whole genome shotgun sequence (14289 bp)
Overview 1 RT 1: 1-7475 bp Neighborhood of RT #1 [1, 7498] DDE_Tnp_1_4 RVT-GII GIIM HTH_31 MLTR_LBD STKc_PknB_like COG3903 TPR_12 HTH_LUXR Feature: gene Location: 1-643 bp Feature: domain Description: DDE_Tnp_1_4 Location: 43-640 bp Feature: domain Description: DDE_Tnp_1_4 Location: 43-640 bp Feature: gene Location: 837-2099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053-1713 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053-1713 bp Feature: domain Description: GIIM Note: maturase Location: 1791-2010 bp Feature: domain Description: GIIM Note: maturase Location: 1791-2 010 bp Feature: gene Location: 2665-3555 bp Feature: domain Description: HTH_31 Location: 2683-2929 bp Feature: domain Description: HTH_31 Location: 2 683-2 92 9 bp Feature: domain Description: MLTR_LBD Location: 2992-3490 bp Feature: domain Description: MLTR_LBD Location: 2 992 -3490 bp Feature: gene Location: 4151-7498 bp Feature: domain Description: STKc_PknB_like Location: 4241-5000 bp Feature: domain Description: STKc_PknB_like Location: 42 41-5000 bp Feature: domain Description: COG3903 Location: 5264-6521 bp Feature: domain Description: COG3903 Location: 52 64-652 1 bp Feature: domain Description: TPR_12 Location: 6686-6869 bp Feature: domain Description: TPR_12 Location: 6686-6869 bp Feature: domain Description: HTH_LUXR Location: 7313-7475 bp Feature: domain Description: HTH_LUXR Location: 7313-7475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_31 (pfam13560), MLTR_LBD (pfam17765), STKc_PknB_like (cd14014), COG3903 (Predicted ATPase ), TPR_12 (pfam13424), HTH_LUXR (smart00421), RVT-GII, GIIM (pfam08388)