myRT

myRT report for GCA_001556015.1_ASM155601v1

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Seq: LSIA01000011.1 Novosphingobium sp. CCH12-A3 CCH12-A3_contig11, whole genome shotgun sequence (14897 bp)
Overview 1 RT 1: 1487-9819 bp Neighborhood of RT #1 [1487, 11522] Piwi_piwi-like_ProArk SIR2_2 RVT-UG1 ParB_N_like Feature: gene Location: 1487-2938 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 1586-2894 bp Feature: domain Description: Piwi_piwi-like_ProArk Location: 1 586-2894 bp Feature: gene Location: 2938-4686 bp Feature: domain Description: SIR2_2 Location: 3226-3604 bp Feature: domain Description: SIR2_2 Location: 3226-3604 bp Feature: gene Location: 5075-8764 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 5657-6152 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 5657-61 52 bp Feature: gene Location: 9212-9367 bp Feature: gene Location: 9513-11522 bp Feature: domain Description: ParB_N_like Location: 9579-9819 bp Feature: domain Description: ParB_N_like Location: 9579-981 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Piwi_piwi-like_ProArk (cd04659), SIR2_2 (pfam13289), RVT-UG1, ParB_N_like (cd16411)

Seq: LSIA01000122.1 Novosphingobium sp. CCH12-A3 CCH12-A3_contig122, whole genome shotgun sequence (2241 bp)
Overview 1 RT 1: 76-2238 bp Neighborhood of RT #1 [76, 2238] RVT-GII GIIM Feature: gene Location: 76-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-1084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349-1084 bp Feature: domain Description: GIIM Note: maturase Location: 1156-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1156-1384 bp Feature: gene Location: 1756-2238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSIA01000281.1 Novosphingobium sp. CCH12-A3 CCH12-A3_contig281, whole genome shotgun sequence (41314 bp)
Overview 1 RT 1: 3-2718 bp Neighborhood of RT #1 [3, 2718] RVT-GII Intron_maturas2 ArdC Feature: gene Location: 3-1817 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183-1020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 183 -1020 bp Feature: domain Description: Intron_maturas2 Location: 1143-1389 bp Feature: domain Description: Intron_maturas2 Location: 1143 -13 89 bp Feature: gene Location: 1820-2392 bp Feature: domain Description: ArdC Location: 1859-2351 bp Feature: domain Description: ArdC Location: 1859-23 51 bp Feature: gene Location: 2389-2718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), ArdC (COG4227)