myRT

myRT report for GCA_001556295.1_ASM155629v1

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Seq: LSIO01000038.1 Blastomonas sp. CCH5-A3 CCH5-A3_contig39, whole genome shotgun sequence (18041 bp)
Overview 1 RT 1: 536-6200 bp 2 RT 2: 8354-12994 bp Neighborhood of RT #1 [536, 6200] YbjD YbjD RVT-UG7 Neighborhood of RT #2 [8354, 12994] DDE_Tnp_1 DUF4096 RVT-UG1 Feature: gene Location: 536-1402 bp Feature: gene Location: 1474-3177 bp Feature: domain Description: YbjD Location: 1495-1654 bp Feature: domain Description: YbjD Location: 1 495-1 654 bp Feature: domain Description: YbjD Location: 2437-2923 bp Feature: domain Description: YbjD Location: 2437-2923 bp Feature: gene Location: 3402-5030 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3843-4236 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 3843-4236 bp Feature: gene Location: 5140-5772 bp Feature: gene Location: 6024-6200 bp Feature: gene Location: 8354-8713 bp Feature: domain Description: DDE_Tnp_1 Location: 8366-8696 bp Feature: domain Description: DDE_Tnp_1 Location: 8366-8696 bp Feature: gene Location: 8719-9111 bp Feature: domain Description: DUF4096 Location: 8743-8953 bp Feature: domain Description: DUF4096 Location: 8743-8953 bp Feature: gene Location: 9168-10793 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9750-10218 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 9750-1 021 8 bp Feature: gene Location: 10943-11251 bp Feature: gene Location: 11354-12994 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YbjD (COG3593), RVT-UG7, DDE_Tnp_1 (pfam01609), DUF4096 (pfam13340), RVT-UG1

Seq: LSIO01000063.1 Blastomonas sp. CCH5-A3 CCH5-A3_contig65, whole genome shotgun sequence (6358 bp)
Overview 1 RT 1: 885-6354 bp Neighborhood of RT #1 [885, 6356] SodA ChrA ChrA RVT-GII Intron_maturas2 HNHc SSB_OBF Feature: gene Location: 885-1604 bp Feature: domain Description: SodA Location: 1050-1599 bp Feature: domain Description: SodA Location: 1050-1599 bp Feature: gene Location: 1614-2933 bp Feature: domain Description: ChrA Location: 1644-2172 bp Feature: domain Description: ChrA Location: 1644-2 172 bp Feature: domain Description: ChrA Location: 2313-2736 bp Feature: domain Description: ChrA Location: 2 313-2 736 bp Feature: gene Location: 3792-5657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4059-4890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4059-4890 bp Feature: domain Description: Intron_maturas2 Location: 5031-5289 bp Feature: domain Description: Intron_maturas2 Location: 5031-52 89 bp Feature: domain Description: HNHc Note: nucleases Location: 5457-5604 bp Feature: domain Description: HNHc Note: nucleases Location: 5457-5604 bp Feature: gene Location: 5819-6139 bp Feature: gene Location: 6201-6356 bp Feature: domain Description: SSB_OBF Location: 6204-6354 bp Feature: domain Description: SSB_OBF Location: 62 04-6354 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SodA (COG0605), ChrA (COG2059), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), SSB_OBF (cd04496)