myRT

myRT report for GCA_001556905.1_ASM155690v1

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Seq: LSKA01000230.1 Mycolicibacterium mucogenicum strain CCH10-A2 CCH10-A2_contig247, whole genome shotgun sequence (2239 bp)
Overview 1 RT 1: 186-1971 bp Neighborhood of RT #1 [186, 2111] RVT-GII GIIM Feature: gene Location: 186-431 bp Feature: gene Location: 648-2111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1668 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 978-1 668 bp Feature: domain Description: GIIM Note: maturase Location: 1743-1971 bp Feature: domain Description: GIIM Note: maturase Location: 1 743-1 971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSKA01000284.1 Mycolicibacterium mucogenicum strain CCH10-A2 CCH10-A2_contig304, whole genome shotgun sequence (10152 bp)
Overview 1 RT 1: 4860-9492 bp Neighborhood of RT #1 [4860, 9551] Transposase_mut RVT-GII Transposase_mut AcrR Feature: gene Location: 4860-6284 bp Feature: gene Location: 6550-6789 bp Feature: domain Description: Transposase_mut Location: 6556-6709 bp Feature: domain Description: Transposase_mut Location: 6556-6709 bp Feature: gene Location: 7283-8530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7625-8306 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 762 5-8306 bp Feature: gene Location: 8560-8718 bp Feature: domain Description: Transposase_mut Location: 8569-8683 bp Feature: domain Description: Transposase_mut Location: 8569-8683 bp Feature: gene Location: 8877-9551 bp Feature: domain Description: AcrR Location: 8928-9492 bp Feature: domain Description: AcrR Location: 892 8-9492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), RVT-GII, AcrR (COG1309)

Seq: LSKA01000005.1 Mycolicibacterium mucogenicum strain CCH10-A2 CCH10-A2_contig5, whole genome shotgun sequence (9000 bp)
Overview 1 RT 1: 7023-8866 bp Neighborhood of RT #1 [7023, 8866] RVT-GII GIIM Feature: gene Location: 7023-7190 bp Feature: gene Location: 7224-7448 bp Feature: gene Location: 7445-8689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7559-8255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7559-8255 bp Feature: domain Description: GIIM Note: maturase Location: 8327-8552 bp Feature: domain Description: GIIM Note: maturase Location: 83 27-8552 bp Feature: gene Location: 8702-8866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LSKA01000073.1 Mycolicibacterium mucogenicum strain CCH10-A2 CCH10-A2_contig79, whole genome shotgun sequence (15309 bp)
Overview 1 RT 1: 113-5071 bp Neighborhood of RT #1 [113, 5118] RVT-GII GIIM DUF222 STKc_PknB_like PBP2_MidA_like Feature: gene Location: 113-1549 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-1118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 37-1118 bp Feature: domain Description: GIIM Note: maturase Location: 1190-1400 bp Feature: domain Description: GIIM Note: maturase Location: 1190-14 00 bp Feature: gene Location: 2092-3198 bp Feature: domain Description: DUF222 Location: 2206-3067 bp Feature: domain Description: DUF222 Location: 2206-3067 bp Feature: gene Location: 3349-5118 bp Feature: domain Description: STKc_PknB_like Location: 3373-4144 bp Feature: domain Description: STKc_PknB_like Location: 3373-4 14 4 bp Feature: domain Description: PBP2_MidA_like Location: 4399-5071 bp Feature: domain Description: PBP2_MidA_like Location: 4 399-5071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF222 (pfam02720), STKc_PknB_like (cd14014), PBP2_MidA_like (cd01004)