myRT

myRT report for GCA_001558015.1_ASM155801v1

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Seq: LNQX01000014.1 Vibrio splendidus strain NCCB 53037 NODE_14, whole genome shotgun sequence (159836 bp)
Overview 1 RT 1: 340-5868 bp Neighborhood of RT #1 [340, 5868] NERD SWIM_PBPRA1643 RVT-Retrons Trypsin_2 Feature: gene Location: 340-2481 bp Feature: domain Description: NERD Location: 1231-1501 bp Feature: domain Description: NERD Location: 1 231 -1 501 bp Feature: domain Description: SWIM_PBPRA1643 Location: 2371-2476 bp Feature: domain Description: SWIM_PBPRA1 643 Location: 2371 -2476 bp Feature: gene Location: 2827-4518 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959-3562 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2959-3562 bp Feature: domain Description: Trypsin_2 Location: 3955-4387 bp Feature: domain Description: Trypsin_2 Location: 3955-4387 bp Feature: gene Location: 4844-4987 bp Feature: gene Location: 5458-5868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, Trypsin_2 (pfam13365), NERD (pfam08378), SWIM_PBPRA1643 (TIGR04102)

Seq: LNQX01000017.1 Vibrio splendidus strain NCCB 53037 NODE_17, whole genome shotgun sequence (120243 bp)
Overview 1 RT 1: 11786-16147 bp Neighborhood of RT #1 [11786, 16149] RVT-Retrons PRK06084 Feature: gene Location: 11786-12427 bp Feature: gene Location: 12935-13186 bp Feature: gene Location: 13477-14451 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13618-14179 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13618-14179 bp Feature: gene Location: 14578-14769 bp Feature: gene Location: 14881-16149 bp Feature: domain Description: PRK06084 Location: 14884-16147 bp Feature: domain Description: PRK06084 Location: 14884-16147 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK06084 (bifunctional O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase)

Seq: LNQX01000045.1 Vibrio splendidus strain NCCB 53037 NODE_45, whole genome shotgun sequence (2164 bp)
Overview 1 RT 1: 421-1828 bp Neighborhood of RT #1 [421, 2052] RVT_N RVT-GII GIIM Feature: gene Location: 421-2052 bp Feature: RT Description: RVT_N Location: 628-871 bp Feature: RT Description: RVT_N Location: 628-871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 916-1543 bp Feature: domain Description: GIIM Note: maturase Location: 1603-1828 bp Feature: domain Description: GIIM Note: maturase Location: 1603 -1828 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)