myRT

myRT report for GCA_001558115.1_ASM155811v1

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Seq: LNQZ01000002.1 Photobacterium aquimaris strain NCCB 100386 NODE_2, whole genome shotgun sequence (314372 bp)
Overview 1 RT 1: 236336-241399 bp Neighborhood of RT #1 [236336, 241422] RVT_N RVT-GII GIIM DacC Feature: gene Location: 236336-237262 bp Feature: gene Location: 237779-237925 bp Feature: gene Location: 237938-239410 bp Feature: domain Description: RVT_N Location: 237986-238229 bp Feature: domain Description: RVT_N Location: 237986-238229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238274-238901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 238274-238901 bp Feature: domain Description: GIIM Note: maturase Location: 238961-239186 bp Feature: domain Description: GIIM Note: maturase Location: 238961 -2391 86 bp Feature: gene Location: 239433-239624 bp Feature: gene Location: 240043-241422 bp Feature: domain Description: DacC Location: 240331-241399 bp Feature: domain Description: DacC Location: 240331 -241 399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DacC (COG1686)

Seq: LNQZ01000020.1 Photobacterium aquimaris strain NCCB 100386 NODE_20, whole genome shotgun sequence (77353 bp)
Overview 1 RT 1: 28468-31771 bp Neighborhood of RT #1 [28468, 32730] lyz_P1 Phage_holin_2_3 RVT-UG17 SLATT_5 HNH_5 Feature: gene Location: 28468-29004 bp Feature: domain Description: lyz_P1 Location: 28561-28990 bp Feature: domain Description: lyz_P1 Location: 2 8561-2 8990 bp Feature: gene Location: 28982-29197 bp Feature: domain Description: Phage_holin_2_3 Location: 28991-29144 bp Feature: domain Description: Phage_holin_2 _3 Location: 2 8991-2 9144 bp Feature: gene Location: 29336-30652 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 29561-30143 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 9561-30143 bp Feature: gene Location: 30659-31231 bp Feature: domain Description: SLATT_5 Location: 30677-31226 bp Feature: domain Description: SLATT_5 Location: 30677-312 2 6 bp Feature: gene Location: 31564-32730 bp Feature: domain Description: HNH_5 Location: 31600-31771 bp Feature: domain Description: HNH_5 Location: 31600-31771 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT lyz_P1 (cd16901), Phage_holin_2_3 (pfam16080), RVT-UG17, SLATT_5 (pfam18160), HNH_5 (pfam14279)

Seq: LNQZ01000038.1 Photobacterium aquimaris strain NCCB 100386 NODE_38, whole genome shotgun sequence (27478 bp)
Overview 1 RT 1: 23558-26438 bp Neighborhood of RT #1 [23558, 26662] Pepdidase_M14_N M14_PaCCP-like RVT_N RVT-GII GIIM Feature: gene Location: 23558-24703 bp Feature: domain Description: Pepdidase_M14_N Location: 23567-23885 bp Feature: domain Description: Pepdidase_M14_N Location: 23 567-23 885 bp Feature: domain Description: M14_PaCCP-like Location: 23894-24674 bp Feature: domain Description: M14_PaCCP-like Location: 23 894-24674 bp Feature: gene Location: 24798-25007 bp Feature: gene Location: 25031-26662 bp Feature: domain Description: RVT_N Location: 25238-25481 bp Feature: domain Description: RVT_N Location: 2523 8-25481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25526-26153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25526-26153 bp Feature: domain Description: GIIM Note: maturase Location: 26213-26438 bp Feature: domain Description: GIIM Note: maturase Location: 26213 -2643 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pepdidase_M14_N (pfam18027), M14_PaCCP-like (cd06234), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: LNQZ01000041.1 Photobacterium aquimaris strain NCCB 100386 NODE_41, whole genome shotgun sequence (20484 bp)
Overview 1 RT 1: 194-4340 bp Neighborhood of RT #1 [194, 4504] BrnA_antitoxin COG2929 RVT-UG2 SR_Res_par Feature: gene Location: 194-403 bp Feature: domain Description: BrnA_antitoxin Location: 236-362 bp Feature: domain Description: BrnA_antitoxin Location: 236-362 bp Feature: gene Location: 396-692 bp Feature: domain Description: COG2929 Location: 411-678 bp Feature: domain Description: COG2929 Location: 4 11-678 bp Feature: gene Location: 1085-2395 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1286-2099 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1286-2099 bp Feature: gene Location: 2742-3686 bp Feature: gene Location: 3905-4504 bp Feature: domain Description: SR_Res_par Location: 3914-4340 bp Feature: domain Description: SR_Res_par Location: 3914 -4 34 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BrnA_antitoxin (pfam14384), COG2929 (Uncharacterized conserved protein, DUF497 family ), RVT-UG2, SR_Res_par (cd03767)