myRT

myRT report for GCA_001560865.1_ASM156086v1

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Seq: LODH01000055.1 Pseudomonas aeruginosa strain 105777 LT17_contig000056, whole genome shotgun sequence (125536 bp)
Overview 1 RT 1: 50130-58330 bp 2 RT 2: 74594-85265 bp Neighborhood of RT #1 [50130, 58338] COG3178 RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74594, 85366] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 50130-51146 bp Ori: KXG12546.1 Feature: domain Description: COG3178 Location: 50133-51132 bp Feature: domain Description: COG31 78 Location: 501 33-51 1 32 bp Feature: gene Location: 51443-51577 bp Feature: gene Location: 52821-54131 bp Ori: KXG12548.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52824-53400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52824-53400 bp Feature: domain Description: YkfC Location: 53607-53760 bp Feature: domain Description: YkfC Location: 53607-53760 bp Feature: domain Description: HNH Note: nucleases Location: 53937-54075 bp Feature: domain Description: HNH Note: nucleases Location: 53937-54075 bp Feature: gene Location: 54264-57065 bp Ori: KXG12549.1 Gene: lptD Feature: domain Description: LptD Location: 54459-57051 bp Feature: domain Description: LptD Location: 54459-57051 bp Feature: gene Location: 57046-58338 bp Ori: KXG12550.1 Gene: surA_2 Feature: domain Description: PRK10770 Location: 57136-58330 bp Feature: domain Description: PRK1 0770 Location: 571 36-58330 bp Feature: gene Location: 74594-76447 bp Ori: KXG12568.1 Gene: rpoD_1 Feature: domain Description: PRK05658 Location: 74606-76445 bp Feature: domain Description: PRK05658 Location: 74606-76445 bp Feature: gene Location: 76554-80291 bp Ori: KXG12569.1 Gene: gmr_8 Feature: domain Description: PBP2_BvgS_HisK_like Location: 76662-77319 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76662-7731 9 bp Feature: domain Description: PRK09776 Location: 77532-78003 bp Feature: domain Description: PRK09776 Location: 77532-78003 bp Feature: domain Description: PAS Location: 78093-78585 bp Feature: domain Description: PAS Location: 78093-78585 bp Feature: domain Description: PRK10060 Location: 78594-80241 bp Feature: domain Description: PRK1 0060 Location: 78594-80241 bp Feature: gene Location: 81372-83057 bp Ori: KXG12570.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 81429-81669 bp Feature: domain Description: RVT_N Location: 81 429-81 669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81717-82353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 71 7-82353 bp Feature: domain Description: GIIM Note: maturase Location: 82407-82638 bp Feature: domain Description: GIIM Note: maturase Location: 82407-82638 bp Feature: domain Description: HNH Note: nucleases Location: 82890-83028 bp Feature: domain Description: HNH Note: nucleases Location: 82890-83028 bp Feature: gene Location: 83781-84902 bp Ori: KXG12571.1 Feature: domain Description: COG3177 Location: 83799-84891 bp Feature: domain Description: COG31 77 Location: 83799-84891 bp Feature: gene Location: 84995-85366 bp Ori: KXG12572.1 Feature: domain Description: NERD Location: 85094-85265 bp Feature: domain Description: NERD Location: 85094-85265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), GIIM (pfam08388), COG3177 (Fic family protein ), NERD (pfam08378)

Seq: LODH01000021.1 Pseudomonas aeruginosa strain 105777 LT17_contig000021, whole genome shotgun sequence (88420 bp)
Overview 1 RT 1: 19799-26686 bp Neighborhood of RT #1 [19799, 26706] IV_pilus_PilQ DEAH_box_HrpB RVT-UG15 PBP2_HisK Feature: gene Location: 19799-20413 bp Ori: KXG15039.1 Gene: pilQ_2 Feature: domain Description: IV_pilus_PilQ Location: 20189-20399 bp Feature: domain Description: IV_pilus_PilQ Location: 2 0189-2 0399 bp Feature: gene Location: 20728-23250 bp Ori: KXG15040.1 Gene: hrpB_1 Feature: domain Description: DEAH_box_HrpB Location: 20740-23245 bp Feature: domain Description: DEAH_box_HrpB Location: 2 0740-2 32 45 bp Feature: gene Location: 23361-24662 bp Ori: KXG15041.1 Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 23466-23880 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 2 3466-2 3880 bp Feature: gene Location: 25541-25948 bp Feature: gene Location: 25972-26706 bp Ori: KXG15043.1 Feature: domain Description: PBP2_HisK Location: 26074-26686 bp Feature: domain Description: PBP2 _HisK Location: 2 6074-2 6686 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IV_pilus_PilQ (TIGR02515), DEAH_box_HrpB (TIGR01970), RVT-UG15, PBP2_HisK (cd13704)