myRT

myRT report for GCA_001561755.1_ASM156175v1

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Seq: LRWU01000100.1 Escherichia coli strain B104 Contig_100, whole genome shotgun sequence (13274 bp)
Overview 1 RT 1: 7141-11014 bp Neighborhood of RT #1 [7141, 11385] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 7141-7317 bp Feature: gene Location: 7725-8429 bp Feature: domain Description: SLATT_5 Location: 7887-8397 bp Feature: domain Description: SLATT_5 Location: 7887-8397 bp Feature: gene Location: 8407-9777 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8635-9241 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 8635-9241 bp Feature: gene Location: 9890-10474 bp Feature: domain Description: Caudo_TAP Location: 10106-10463 bp Feature: domain Description: Caudo_TAP Location: 1 01 06-1 0463 bp Feature: gene Location: 10483-11385 bp Feature: domain Description: Macro_Appr_pase Location: 10501-11014 bp Feature: domain Description: Macro_Appr_pase Location: 1 0501 -1 1 01 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)

Seq: LRWU01000121.1 Escherichia coli strain B104 Contig_121, whole genome shotgun sequence (13814 bp)
Overview 1 RT 1: 10378-13749 bp Neighborhood of RT #1 [10378, 13749] autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 10378-10995 bp Feature: domain Description: autotrans_barl Location: 10501-10942 bp Feature: domain Description: autotrans_barl Location: 10501-10942 bp Feature: gene Location: 10998-11444 bp Feature: domain Description: PHA02517 Location: 11001-11442 bp Feature: domain Description: PHA02 517 Location: 11001-11442 bp Feature: gene Location: 11561-13084 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11834-12566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11834-12 566 bp Feature: domain Description: GIIM Note: maturase Location: 12641-12839 bp Feature: domain Description: GIIM Note: maturase Location: 12 641-12 839 bp Feature: gene Location: 13378-13749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: LRWU01000154.1 Escherichia coli strain B104 Contig_155, whole genome shotgun sequence (5679 bp)
Overview 1 RT 1: 233-3961 bp Neighborhood of RT #1 [233, 3966] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 233-439 bp Feature: gene Location: 773-982 bp Feature: gene Location: 1117-3018 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1384-2215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 84-2215 bp Feature: domain Description: Intron_maturas2 Location: 2329-2587 bp Feature: domain Description: Intron_maturas2 Location: 23 29-2587 bp Feature: domain Description: HNHc Note: nucleases Location: 2761-2923 bp Feature: domain Description: HNHc Note: nucleases Location: 2761-2923 bp Feature: gene Location: 3213-3665 bp Feature: domain Description: PRK13732 Location: 3219-3663 bp Feature: domain Description: PRK13 73 2 Location: 3 219-3 663 bp Feature: gene Location: 3733-3966 bp Feature: domain Description: DUF905 Location: 3763-3961 bp Feature: domain Description: DUF905 Location: 3 763 -3 961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: LRWU01000023.1 Escherichia coli strain B104 Contig_23, whole genome shotgun sequence (180942 bp)
Overview 1 RT 1: 78617-82558 bp Neighborhood of RT #1 [78617, 82558] RVT-Retrons Feature: gene Location: 78617-78856 bp Feature: gene Location: 79163-79339 bp Feature: gene Location: 79412-81184 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79571-80189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 79571-80189 bp Feature: gene Location: 81206-81373 bp Feature: gene Location: 81419-82558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons