myRT

myRT report for GCA_001562335.1_ASM156233v1

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Seq: LORF01000041.1 Escherichia coli strain 105433 LT30_contig000041, whole genome shotgun sequence (91552 bp)
Overview 1 RT 1: 75220-82872 bp Neighborhood of RT #1 [75220, 82872] DUF4917 AAA_15 RVT-Retrons Nuc_deoxyrib_tr Feature: gene Location: 75220-76239 bp Feature: domain Description: DUF4917 Location: 75280-76204 bp Feature: domain Description: DUF491 7 Location: 75280-76204 bp Feature: gene Location: 77638-79884 bp Feature: domain Description: AAA_15 Location: 77641-78649 bp Feature: domain Description: AAA_1 5 Location: 77641 -78649 bp Feature: gene Location: 79999-81099 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80182-80710 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 801 82-8071 0 bp Feature: gene Location: 81755-82624 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 82277-82448 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 82277-82448 bp Feature: gene Location: 82621-82872 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4917 (pfam16263), AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014)

Seq: LORF01000063.1 Escherichia coli strain 105433 LT30_contig000063, whole genome shotgun sequence (42892 bp)
Overview 1 RT 1: 1879-13458 bp Neighborhood of RT #1 [1879, 13469] DUF262 DUF1524 DUF4011 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 1879-3921 bp Feature: domain Description: DUF262 Location: 1918-2521 bp Feature: domain Description: DUF2 62 Location: 1918-2 52 1 bp Feature: domain Description: DUF1524 Location: 3544-3892 bp Feature: domain Description: DUF152 4 Location: 3544-3892 bp Feature: gene Location: 4108-9843 bp Feature: domain Description: DUF4011 Location: 4198-5032 bp Feature: domain Description: DUF4011 Location: 4198-5032 bp Feature: domain Description: DEXXQc_SF1 Location: 5389-8491 bp Feature: domain Description: DEXXQc_SF1 Location: 5389-8491 bp Feature: domain Description: SF1_C_Upf1 Location: 8500-9028 bp Feature: domain Description: SF1_C_Upf1 Location: 8500-902 8 bp Feature: domain Description: MTES_1575 Location: 9157-9448 bp Feature: domain Description: MTES_1575 Location: 9157-9448 bp Feature: gene Location: 10603-12126 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10876-11608 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10876-11608 bp Feature: domain Description: GIIM Note: maturase Location: 11683-11881 bp Feature: domain Description: GIIM Note: maturase Location: 11683-11881 bp Feature: gene Location: 12718-13137 bp Feature: domain Description: PHA02517 Location: 12733-13072 bp Feature: domain Description: PHA02 517 Location: 12 733-13072 bp Feature: gene Location: 13185-13469 bp Feature: domain Description: InsE Location: 13197-13458 bp Feature: domain Description: InsE Location: 13197-13458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), DUF262 (pfam03235), DUF1524 (pfam07510), DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741)

Seq: LORF01000056.1 Escherichia coli strain 105433 LT30_contig000056, whole genome shotgun sequence (24586 bp)
Overview 1 RT 1: 817-4287 bp Neighborhood of RT #1 [817, 4394] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 817-1119 bp Feature: domain Description: Arm-DNA-bind_3 Location: 826-1078 bp Feature: domain Description: Arm-DNA-bind_3 Location: 826-1078 bp Feature: gene Location: 1574-2506 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1676-2270 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1676-2270 bp Feature: gene Location: 2508-3494 bp Feature: gene Location: 4122-4394 bp Feature: domain Description: PRK09678 Location: 4131-4287 bp Feature: domain Description: PRK09678 Location: 413 1-4287 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional), Arm-DNA-bind_3 (pfam13356)