myRT

myRT report for GCA_001566385.1_ASM156638v1

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Seq: LRAA01000230.1 Bacillus cereus strain MB.18, whole genome shotgun sequence (60820 bp)
Overview 1 RT 1: 31467-41173 bp Neighborhood of RT #1 [31467, 41173] TraC-F-type RVT-GII HNHc TraC-F-type Feature: gene Location: 31467-35447 bp Feature: gene Location: 35478-36620 bp Feature: domain Description: TraC-F-type Location: 35481-36459 bp Feature: domain Description: TraC-F-type Location: 35481 -36459 bp Feature: gene Location: 36737-38569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37037-37742 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37037-37742 bp Feature: domain Description: HNHc Note: nucleases Location: 38321-38453 bp Feature: domain Description: HNHc Note: nucleases Location: 38321 -38453 bp Feature: gene Location: 39288-40256 bp Feature: domain Description: TraC-F-type Location: 39708-40182 bp Feature: domain Description: TraC-F-type Location: 39708-401 82 bp Feature: gene Location: 40259-41173 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), RVT-GII, HNHc (smart00507)

Seq: LRAA01000059.1 Bacillus cereus strain MB.18, whole genome shotgun sequence (2885 bp)
Overview 1 RT 1: 181-1993 bp Neighborhood of RT #1 [181, 2109] RVT-GII HNHc Feature: gene Location: 181-2109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502-1237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 502 -12 37 bp Feature: domain Description: HNHc Note: nucleases Location: 1828-1993 bp Feature: domain Description: HNHc Note: nucleases Location: 182 8-1993 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)

Seq: LRAA01000161.1 Bacillus cereus strain MB.18, whole genome shotgun sequence (12342 bp)
Overview 1 RT 1: 4163-11114 bp Neighborhood of RT #1 [4163, 11114] HepA RVT-GII HNHc DEXDc Feature: gene Location: 4163-4876 bp Feature: gene Location: 4893-6542 bp Feature: domain Description: HepA Location: 5754-5988 bp Feature: domain Description: HepA Location: 5754-5988 bp Feature: gene Location: 6636-8435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6939-7641 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 693 9-7641 bp Feature: domain Description: HNHc Note: nucleases Location: 8166-8316 bp Feature: domain Description: HNHc Note: nucleases Location: 8166-83 16 bp Feature: gene Location: 9136-10815 bp Feature: domain Description: DEXDc Location: 9916-10789 bp Feature: domain Description: DEXDc Location: 9916-10789 bp Feature: gene Location: 10887-11114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HepA (COG0553), RVT-GII, HNHc (smart00507), DEXDc (smart00487)

Seq: LRAA01000214.1 Bacillus cereus strain MB.18, whole genome shotgun sequence (37880 bp)
Overview 1 RT 1: 152-9004 bp 2 RT 2: 12779-18006 bp Neighborhood of RT #1 [152, 9183] TraG-D_C Ftsk_gamma Ftsk_gamma RVT_N RVT-GII GIIM nuc_hydro rpsA Neighborhood of RT #2 [12779, 18011] COG4712 RVT-GII beta_clamp Feature: gene Location: 152-538 bp Feature: gene Location: 556-4056 bp Feature: domain Description: TraG-D_C Location: 2173-2533 bp Feature: domain Description: TraG-D_C Location: 2173-2533 bp Feature: domain Description: Ftsk_gamma Location: 2941-3118 bp Feature: domain Description: Ftsk_gamma Location: 294 1-3118 bp Feature: domain Description: Ftsk_gamma Location: 3250-3385 bp Feature: domain Description: Ftsk_gamma Location: 3250-3385 bp Feature: gene Location: 4269-5915 bp Feature: RT Description: RVT_N Location: 4311-4548 bp Feature: RT Description: RVT_N Location: 4 311-4 54 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4602-5262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 602-5262 bp Feature: domain Description: GIIM Note: maturase Location: 5331-5562 bp Feature: domain Description: GIIM Note: maturase Location: 5331-5562 bp Feature: gene Location: 6635-7585 bp Feature: domain Description: nuc_hydro Location: 6650-7556 bp Feature: domain Description: nuc_hydro Location: 6650-7556 bp Feature: gene Location: 8200-9183 bp Feature: domain Description: rpsA Location: 8467-9004 bp Feature: domain Description: rpsA Location: 84 67-9004 bp Feature: gene Location: 12779-13174 bp Feature: gene Location: 13197-13553 bp Feature: domain Description: COG4712 Location: 13206-13548 bp Feature: domain Description: COG4 712 Location: 13206-1354 8 bp Feature: gene Location: 14315-16213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14630-15332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 630-15332 bp Feature: gene Location: 16291-16818 bp Feature: gene Location: 16899-18011 bp Feature: domain Description: beta_clamp Location: 16902-18006 bp Feature: domain Description: beta_clamp Location: 16902-18006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), TraG-D_C (pfam12696), Ftsk_gamma (smart00843), rpsA (TIGR00717), COG4712 (Uncharacterized protein ), beta_clamp (cl29549)