myRT

myRT report for GCA_001567345.1_ASM156734v1

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Seq: JZEK01000014.1 Candidatus Brocadia sinica isolate OLB1 UZ01_contig000014, whole genome shotgun sequence (346096 bp)
Overview 1 RT 1: 342284-345919 bp Neighborhood of RT #1 [342284, 346095] TAT_signal COG2006 GIIM RVT-GII GIIM RVT-CRISPR-like Feature: gene Location: 342284-343276 bp Ori: KXK33040.1 Feature: domain Description: TAT_signal Location: 342302-342350 bp Feature: domain Description: TAT_signal Location: 342302-342350 bp Feature: domain Description: COG2006 Location: 342482-343241 bp Feature: domain Description: COG2006 Location: 342482-343241 bp Feature: gene Location: 343670-344104 bp Ori: KXK33041.1 Feature: domain Description: GIIM Note: maturase Location: 343865-344027 bp Feature: domain Description: GIIM Note: maturase Location: 343865-344027 bp Feature: gene Location: 344420-345721 bp Ori: KXK33042.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344705-345344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 344705-345344 bp Feature: domain Description: GIIM Note: maturase Location: 345425-345635 bp Feature: domain Description: GIIM Note: maturase Location: 345425-345635 bp Feature: gene Location: 345835-346095 bp Ori: KXK33043.1 Gene: ltrA Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 345847-345919 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 345847-34591 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TAT_signal (pfam10518), COG2006 (Uncharacterized conserved protein, DUF362 family ), GIIM (pfam08388), RVT-GII, RVT-CRISPR

Seq: JZEK01000050.1 Candidatus Brocadia sinica isolate OLB1 UZ01_contig000050, whole genome shotgun sequence (57153 bp)
Overview 1 RT 1: 27131-33959 bp Neighborhood of RT #1 [27131, 34618] PRK05431 LexA_DNA_bind RVT-GII RVT-GII KOG1263 dCache_1 Feature: gene Location: 27131-28408 bp Ori: KXK29143.1 Feature: domain Description: PRK05431 Location: 27134-28400 bp Feature: domain Description: PRK05431 Location: 2 7134-2 8400 bp Feature: gene Location: 29131-29394 bp Ori: KXK29144.1 Gene: lexA Feature: domain Description: LexA_DNA_bind Location: 29167-29347 bp Feature: domain Description: LexA_DNA_bind Location: 2 9167-2 9347 bp Feature: gene Location: 30178-30606 bp Ori: KXK29145.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30391-30583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30391-30583 bp Feature: gene Location: 30591-31073 bp Ori: KXK29146.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30594-31011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30594-31011 bp Feature: gene Location: 31789-33015 bp Ori: KXK29147.1 Feature: domain Description: KOG1263 Location: 32131-32857 bp Feature: domain Description: KOG12 63 Location: 32 131-32 857 bp Feature: gene Location: 33083-34618 bp Ori: KXK29148.1 Feature: domain Description: dCache_1 Location: 33251-33959 bp Feature: domain Description: dCache_1 Location: 332 51-33959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05431 (seryl-tRNA synthetase; Provisional), LexA_DNA_bind (pfam01726), RVT-GII, KOG1263 (KOG1263, Multicopper oxidases ), dCache_1 (pfam02743)

Seq: JZEK01000075.1 Candidatus Brocadia sinica isolate OLB1 UZ01_contig000075, whole genome shotgun sequence (11476 bp)
Overview 1 RT 1: 8063-11339 bp Neighborhood of RT #1 [8063, 11476] RVT-CRISPR-like GxxExxY DDE_Tnp_IS66 Feature: gene Location: 8063-8962 bp Feature: gene Location: 8974-9753 bp Feature: gene Location: 9875-10696 bp Ori: KXK25961.1 Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9941-10538 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 9941-1053 8 bp Feature: gene Location: 10696-11058 bp Ori: KXK25962.1 Feature: domain Description: GxxExxY Location: 10708-11050 bp Feature: domain Description: GxxExxY Location: 10708-11050 bp Feature: gene Location: 11141-11476 bp Ori: KXK25963.1 Feature: domain Description: DDE_Tnp_IS66 Location: 11171-11339 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11171-113 3 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GxxExxY (TIGR04256), DDE_Tnp_IS66 (pfam03050)