myRT

myRT report for GCA_001569665.1_ASM156966v1

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Seq: BCOF01000078.1 Salmonella enterica DNA, contig: contig000078, strain: NGUA07, whole genome shotgun sequence (685389 bp)
Overview 1 RT 1: 44179-47195 bp 2 RT 2: 518611-524736 bp Neighborhood of RT #1 [44179, 47195] InsE RVT-Retrons TIR-like Neighborhood of RT #2 [518611, 524918] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 44179-44481 bp Ori: GAR24323.1 Feature: domain Description: InsE Location: 44188-44470 bp Feature: domain Description: InsE Location: 441 88-44470 bp Feature: gene Location: 44913-45140 bp Feature: gene Location: 45171-46130 bp Ori: GAR24325.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45351-45873 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45351 -45873 bp Feature: gene Location: 46180-47019 bp Ori: GAR24326.1 Feature: domain Description: TIR-like Location: 46585-46939 bp Feature: domain Description: TIR-like Location: 46585-46939 bp Feature: gene Location: 47085-47195 bp Feature: gene Location: 518611-520593 bp Ori: GAR24771.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 518749-520591 bp Feature: domain Description: PRK05658 Location: 51 8749-520591 bp Feature: gene Location: 520717-521223 bp Ori: GAR24772.1 Gene: mug Feature: domain Description: PRK10201 Location: 520720-521218 bp Feature: domain Description: PRK1 0201 Location: 520720-521 21 8 bp Feature: gene Location: 521547-522311 bp Ori: GAR24773.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 521670-522123 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 521 670-5221 23 bp Feature: gene Location: 522281-522466 bp Feature: gene Location: 523218-524918 bp Ori: GAR24775.1 Feature: domain Description: 5 Location: 524442-524736 bp Feature: domain Description: 5 Location: 524442-524736 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-Retrons, TIR-like (pfam10137), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)