myRT

myRT report for GCA_001569845.1_ASM156984v1

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Seq: BCOO01000078.1 Salmonella enterica DNA, contig: contig000078, strain: NGUA16, whole genome shotgun sequence (686235 bp)
Overview 1 RT 1: 161314-167619 bp 2 RT 2: 638931-641936 bp Neighborhood of RT #1 [161314, 167621] 5 RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [638931, 641947] TIR-like RVT-Retrons InsE Feature: gene Location: 161314-163014 bp Ori: GAR65145.1 Feature: domain Description: 5 Location: 162538-162832 bp Feature: domain Description: 5 Location: 1 62538-1 62832 bp Feature: gene Location: 163766-163951 bp Feature: gene Location: 163921-164685 bp Ori: GAR65147.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 164044-164497 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 64044-1 64497 bp Feature: gene Location: 165009-165515 bp Ori: GAR65148.1 Gene: mug Feature: domain Description: PRK10201 Location: 165012-165510 bp Feature: domain Description: PRK1 0201 Location: 1 6501 2-1 6551 0 bp Feature: gene Location: 165639-167621 bp Ori: GAR65149.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 165777-167619 bp Feature: domain Description: PRK05658 Location: 1 65777-1 6761 9 bp Feature: gene Location: 638931-639041 bp Feature: gene Location: 639107-639946 bp Ori: GAR65594.1 Feature: domain Description: TIR-like Location: 639512-639866 bp Feature: domain Description: TIR-like Location: 63951 2-639866 bp Feature: gene Location: 639996-640955 bp Ori: GAR65595.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 640176-640698 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6401 76-640698 bp Feature: gene Location: 640986-641213 bp Feature: gene Location: 641645-641947 bp Ori: GAR65597.1 Feature: domain Description: InsE Location: 641654-641936 bp Feature: domain Description: InsE Location: 641 654-641 936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)