myRT

myRT report for GCA_001569885.1_ASM156988v1

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Seq: BCOQ01000275.1 Salmonella enterica DNA, contig: contig000275, strain: NGUA18, whole genome shotgun sequence (516804 bp)
Overview 1 RT 1: 30-4841 bp 2 RT 2: 475982-478987 bp Neighborhood of RT #1 [30, 4843] RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [475982, 478998] TIR-like RVT-Retrons InsE Feature: gene Location: 30-236 bp Feature: gene Location: 988-1173 bp Feature: gene Location: 1143-1907 bp Ori: GAR75628.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1266-1719 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 266-1 71 9 bp Feature: gene Location: 2231-2737 bp Ori: GAR75629.1 Gene: mug Feature: domain Description: PRK10201 Location: 2234-2732 bp Feature: domain Description: PRK1 0201 Location: 2234-2732 bp Feature: gene Location: 2861-4843 bp Ori: GAR75630.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 2999-4841 bp Feature: domain Description: PRK05658 Location: 2999-4841 bp Feature: gene Location: 475982-476092 bp Feature: gene Location: 476158-476997 bp Ori: GAR76074.1 Feature: domain Description: TIR-like Location: 476563-476917 bp Feature: domain Description: TIR-like Location: 476563-47691 7 bp Feature: gene Location: 477047-478006 bp Ori: GAR76075.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 477227-477749 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 477227-477749 bp Feature: gene Location: 478037-478264 bp Feature: gene Location: 478696-478998 bp Ori: GAR76077.1 Feature: domain Description: InsE Location: 478705-478987 bp Feature: domain Description: InsE Location: 478705-478987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)