myRT

myRT report for GCA_001569925.1_ASM156992v1

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Seq: BCOS01000071.1 Salmonella enterica DNA, contig: contig000071, strain: NGUA20, whole genome shotgun sequence (145972 bp)
Overview 1 RT 1: 44289-47305 bp Neighborhood of RT #1 [44289, 47305] InsE RVT-Retrons TIR-like Feature: gene Location: 44289-44591 bp Ori: GAR83944.1 Feature: domain Description: InsE Location: 44298-44580 bp Feature: domain Description: InsE Location: 44298-44580 bp Feature: gene Location: 45023-45250 bp Feature: gene Location: 45281-46240 bp Ori: GAR83946.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45461-45983 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45461 -45983 bp Feature: gene Location: 46290-47129 bp Ori: GAR83947.1 Feature: domain Description: TIR-like Location: 46695-47049 bp Feature: domain Description: TIR-like Location: 46695-47049 bp Feature: gene Location: 47195-47305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-Retrons, TIR-like (pfam10137)

Seq: BCOS01000059.1 Salmonella enterica DNA, contig: contig000059, strain: NGUA20, whole genome shotgun sequence (119132 bp)
Overview 1 RT 1: 28448-34753 bp Neighborhood of RT #1 [28448, 34755] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 28448-30148 bp Ori: GAR83409.1 Feature: domain Description: 5 Location: 29672-29966 bp Feature: domain Description: 5 Location: 2 9672 -2 9966 bp Feature: gene Location: 30900-31085 bp Feature: gene Location: 31055-31819 bp Ori: GAR83411.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 31178-31631 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 31178-31631 bp Feature: gene Location: 32143-32649 bp Ori: GAR83412.1 Gene: mug Feature: domain Description: PRK10201 Location: 32146-32644 bp Feature: domain Description: PRK102 01 Location: 32 146-32 644 bp Feature: gene Location: 32773-34755 bp Ori: GAR83413.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 32911-34753 bp Feature: domain Description: PRK05658 Location: 32 911-34753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)