myRT

myRT report for GCA_001569945.1_ASM156994v1

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Seq: BCOT01000057.1 Salmonella enterica DNA, contig: contig000057, strain: NGUA21, whole genome shotgun sequence (75161 bp)
Overview 1 RT 1: 27967-30972 bp Neighborhood of RT #1 [27967, 30983] TIR-like RVT-Retrons InsE Feature: gene Location: 27967-28077 bp Feature: gene Location: 28143-28982 bp Ori: GAR87130.1 Feature: domain Description: TIR-like Location: 28548-28902 bp Feature: domain Description: TIR-like Location: 28548-28902 bp Feature: gene Location: 29032-29991 bp Ori: GAR87131.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 29212-29734 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2921 2-29734 bp Feature: gene Location: 30022-30249 bp Feature: gene Location: 30681-30983 bp Ori: GAR87133.1 Feature: domain Description: InsE Location: 30690-30972 bp Feature: domain Description: InsE Location: 30690-30972 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)

Seq: BCOT01000076.1 Salmonella enterica DNA, contig: contig000076, strain: NGUA21, whole genome shotgun sequence (405300 bp)
Overview 1 RT 1: 370526-376651 bp Neighborhood of RT #1 [370526, 376833] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 370526-372508 bp Ori: GAR88465.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 370664-372506 bp Feature: domain Description: PRK05658 Location: 370664-372 506 bp Feature: gene Location: 372632-373138 bp Ori: GAR88466.1 Gene: mug Feature: domain Description: PRK10201 Location: 372635-373133 bp Feature: domain Description: PRK102 01 Location: 372 635-373133 bp Feature: gene Location: 373462-374226 bp Ori: GAR88467.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 373585-374038 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 373585-374038 bp Feature: gene Location: 374196-374381 bp Feature: gene Location: 375133-376833 bp Ori: GAR88469.1 Feature: domain Description: 5 Location: 376357-376651 bp Feature: domain Description: 5 Location: 376357-376651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)