myRT

myRT report for GCA_001569985.1_ASM156998v1

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Seq: BCOV01000111.1 Salmonella enterica DNA, contig: contig000111, strain: NGUA23, whole genome shotgun sequence (49896 bp)
Overview 1 RT 1: 2702-5707 bp Neighborhood of RT #1 [2702, 5718] TIR-like RVT-Retrons InsE Feature: gene Location: 2702-2812 bp Feature: gene Location: 2878-3717 bp Ori: GAR98617.1 Feature: domain Description: TIR-like Location: 3283-3637 bp Feature: domain Description: TIR-like Location: 3283-3637 bp Feature: gene Location: 3767-4726 bp Ori: GAR98618.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3947-4469 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3947-4469 bp Feature: gene Location: 4757-4984 bp Feature: gene Location: 5416-5718 bp Ori: GAR98620.1 Feature: domain Description: InsE Location: 5425-5707 bp Feature: domain Description: InsE Location: 5425-5707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)

Seq: BCOV01000090.1 Salmonella enterica DNA, contig: contig000090, strain: NGUA23, whole genome shotgun sequence (217694 bp)
Overview 1 RT 1: 49873-55998 bp Neighborhood of RT #1 [49873, 56180] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 49873-51855 bp Ori: GAR97647.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 50011-51853 bp Feature: domain Description: PRK05658 Location: 50011-51853 bp Feature: gene Location: 51979-52485 bp Ori: GAR97648.1 Gene: mug Feature: domain Description: PRK10201 Location: 51982-52480 bp Feature: domain Description: PRK102 01 Location: 51982 -52 480 bp Feature: gene Location: 52809-53573 bp Ori: GAR97649.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 52932-53385 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 52 932 -53385 bp Feature: gene Location: 53543-53728 bp Feature: gene Location: 54480-56180 bp Ori: GAR97651.1 Feature: domain Description: 5 Location: 55704-55998 bp Feature: domain Description: 5 Location: 55704-55998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)