myRT

myRT report for GCA_001570085.1_ASM157008v1

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Seq: BCPA01000053.1 Salmonella enterica DNA, contig: contig000053, strain: NGUA28, whole genome shotgun sequence (685499 bp)
Overview 1 RT 1: 160472-166777 bp 2 RT 2: 638195-641200 bp Neighborhood of RT #1 [160472, 166779] 5 RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [638195, 641211] TIR-like RVT-Retrons InsE Feature: gene Location: 160472-162172 bp Ori: GAS17522.1 Feature: domain Description: 5 Location: 161696-161990 bp Feature: domain Description: 5 Location: 1 61 696-1 61 990 bp Feature: gene Location: 162924-163109 bp Feature: gene Location: 163079-163843 bp Ori: GAS17524.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 163202-163655 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 63202-1 63655 bp Feature: gene Location: 164167-164673 bp Ori: GAS17525.1 Gene: mug Feature: domain Description: PRK10201 Location: 164170-164668 bp Feature: domain Description: PRK1 0201 Location: 1 641 70-1 64668 bp Feature: gene Location: 164797-166779 bp Ori: GAS17526.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 164935-166777 bp Feature: domain Description: PRK05658 Location: 1 64935-1 66777 bp Feature: gene Location: 638195-638305 bp Feature: gene Location: 638371-639210 bp Ori: GAS17970.1 Feature: domain Description: TIR-like Location: 638776-639130 bp Feature: domain Description: TIR-like Location: 638776-6391 30 bp Feature: gene Location: 639260-640219 bp Ori: GAS17971.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 639440-639962 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 639440-639962 bp Feature: gene Location: 640250-640477 bp Feature: gene Location: 640909-641211 bp Ori: GAS17973.1 Feature: domain Description: InsE Location: 640918-641200 bp Feature: domain Description: InsE Location: 64091 8-641 200 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)