myRT

myRT report for GCA_001570125.1_ASM157012v1

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Seq: BCPC01000021.1 Salmonella enterica DNA, contig: contig000021, strain: NGUA30, whole genome shotgun sequence (198986 bp)
Overview 1 RT 1: 177340-180345 bp Neighborhood of RT #1 [177340, 180356] TIR-like RVT-Retrons InsE Feature: gene Location: 177340-177450 bp Feature: gene Location: 177516-178355 bp Ori: GAS26702.1 Feature: domain Description: TIR-like Location: 177921-178275 bp Feature: domain Description: TIR-like Location: 1 77921 -1 78275 bp Feature: gene Location: 178405-179364 bp Ori: GAS26703.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 178585-179107 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 78585-1 791 07 bp Feature: gene Location: 179395-179622 bp Feature: gene Location: 180054-180356 bp Ori: GAS26705.1 Feature: domain Description: InsE Location: 180063-180345 bp Feature: domain Description: InsE Location: 1 80063-1 80345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)

Seq: BCPC01000046.1 Salmonella enterica DNA, contig: contig000046, strain: NGUA30, whole genome shotgun sequence (461908 bp)
Overview 1 RT 1: 161516-167821 bp Neighborhood of RT #1 [161516, 167823] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 161516-163216 bp Ori: GAS27848.1 Feature: domain Description: 5 Location: 162740-163034 bp Feature: domain Description: 5 Location: 162 740-163034 bp Feature: gene Location: 163968-164153 bp Feature: gene Location: 164123-164887 bp Ori: GAS27850.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 164246-164699 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1642 46-164699 bp Feature: gene Location: 165211-165717 bp Ori: GAS27851.1 Gene: mug Feature: domain Description: PRK10201 Location: 165214-165712 bp Feature: domain Description: PRK102 01 Location: 1652 14-165712 bp Feature: gene Location: 165841-167823 bp Ori: GAS27852.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 165979-167821 bp Feature: domain Description: PRK05658 Location: 165979-16782 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)