myRT

myRT report for GCA_001570265.1_ASM157026v1

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Seq: BCPJ01000090.1 Salmonella enterica DNA, contig: contig000090, strain: NGUA37, whole genome shotgun sequence (686432 bp)
Overview 1 RT 1: 161516-167821 bp 2 RT 2: 639238-642243 bp Neighborhood of RT #1 [161516, 167823] 5 RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [639238, 642254] TIR-like RVT-Retrons InsE Feature: gene Location: 161516-163216 bp Ori: GAS60257.1 Feature: domain Description: 5 Location: 162740-163034 bp Feature: domain Description: 5 Location: 1 62740-1 63034 bp Feature: gene Location: 163968-164153 bp Feature: gene Location: 164123-164887 bp Ori: GAS60259.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 164246-164699 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 64246-1 64699 bp Feature: gene Location: 165211-165717 bp Ori: GAS60260.1 Gene: mug Feature: domain Description: PRK10201 Location: 165214-165712 bp Feature: domain Description: PRK1 0201 Location: 1 6521 4-1 6571 2 bp Feature: gene Location: 165841-167823 bp Ori: GAS60261.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 165979-167821 bp Feature: domain Description: PRK05658 Location: 1 65979-1 67821 bp Feature: gene Location: 639238-639348 bp Feature: gene Location: 639414-640253 bp Ori: GAS60704.1 Feature: domain Description: TIR-like Location: 639819-640173 bp Feature: domain Description: TIR-like Location: 63981 9-6401 73 bp Feature: gene Location: 640303-641262 bp Ori: GAS60705.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 640483-641005 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 640483-641 005 bp Feature: gene Location: 641293-641520 bp Feature: gene Location: 641952-642254 bp Ori: GAS60707.1 Feature: domain Description: InsE Location: 641961-642243 bp Feature: domain Description: InsE Location: 641 961 -642243 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)