myRT

myRT report for GCA_001570305.1_ASM157030v1

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Seq: BCPL01000078.1 Salmonella enterica DNA, contig: contig000078, strain: NGUA39, whole genome shotgun sequence (749522 bp)
Overview 1 RT 1: 224772-231077 bp 2 RT 2: 702218-705223 bp Neighborhood of RT #1 [224772, 231079] 5 RVT-UG11 PRK10201 PRK05658 Neighborhood of RT #2 [702218, 705234] TIR-like RVT-Retrons InsE Feature: gene Location: 224772-226472 bp Ori: GAS67447.1 Feature: domain Description: 5 Location: 225996-226290 bp Feature: domain Description: 5 Location: 225996-226290 bp Feature: gene Location: 227224-227409 bp Feature: gene Location: 227379-228143 bp Ori: GAS67449.1 Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 227502-227955 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 227502-227955 bp Feature: gene Location: 228467-228973 bp Ori: GAS67450.1 Gene: mug Feature: domain Description: PRK10201 Location: 228470-228968 bp Feature: domain Description: PRK1 0201 Location: 228470-228968 bp Feature: gene Location: 229097-231079 bp Ori: GAS67451.1 Gene: rpoD Feature: domain Description: PRK05658 Location: 229235-231077 bp Feature: domain Description: PRK05658 Location: 229235-231 077 bp Feature: gene Location: 702218-702328 bp Feature: gene Location: 702394-703233 bp Ori: GAS67895.1 Feature: domain Description: TIR-like Location: 702799-703153 bp Feature: domain Description: TIR-like Location: 702799-7031 53 bp Feature: gene Location: 703283-704242 bp Ori: GAS67896.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 703463-703985 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 703463-703985 bp Feature: gene Location: 704273-704500 bp Feature: gene Location: 704932-705234 bp Ori: GAS67898.1 Feature: domain Description: InsE Location: 704941-705223 bp Feature: domain Description: InsE Location: 704941 -705223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)