myRT

myRT report for GCA_001570625.1_ASM157062v1

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Seq: BBQT01000005.1 Syntrophomonas wolfei subsp. methylbutyratica DNA, contig: Swmb_005, strain: JCM14075, whole genome shotgun sequence (171809 bp)
Overview 1 RT 1: 167957-171664 bp Neighborhood of RT #1 [167957, 171783] Cas3''_I Cas3 RVT-GII Feature: gene Location: 167957-170347 bp Feature: domain Description: Cas3''_I Location: 167972-168590 bp Feature: domain Description: Cas3''_I Location: 1 67972-1 68590 bp Feature: domain Description: Cas3 Location: 168746-169937 bp Feature: domain Description: Cas3 Location: 1 68746-1 69937 bp Feature: gene Location: 170671-170862 bp Feature: gene Location: 170899-171783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 171148-171664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 1 48-1 71 664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas3''_I (cd10013), Cas3 (COG2254), RVT-GII

Seq: BBQT01000010.1 Syntrophomonas wolfei subsp. methylbutyratica DNA, contig: Swmb_010, strain: JCM14075, whole genome shotgun sequence (108901 bp)
Overview 1 RT 1: 107339-108899 bp Neighborhood of RT #1 [107339, 108899] COG2405 UPF0175 RVT-GII GIIM Feature: gene Location: 107339-107827 bp Feature: domain Description: COG2405 Location: 107348-107819 bp Feature: domain Description: COG2 405 Location: 107348-107819 bp Feature: gene Location: 107830-108105 bp Feature: domain Description: UPF0175 Location: 107860-108079 bp Feature: domain Description: UPF0175 Location: 107860-108079 bp Feature: gene Location: 108234-108728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 108240-108369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1082 40-108369 bp Feature: domain Description: GIIM Note: maturase Location: 108444-108663 bp Feature: domain Description: GIIM Note: maturase Location: 108444-108663 bp Feature: gene Location: 108756-108899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2405 (Predicted nucleic acid-binding protein, contains PIN domain ), UPF0175 (pfam03683), RVT-GII, GIIM (pfam08388)

Seq: BBQT01000046.1 Syntrophomonas wolfei subsp. methylbutyratica DNA, contig: Swmb_046, strain: JCM14075, whole genome shotgun sequence (1828 bp)
Overview 1 RT 1: 2-1676 bp Neighborhood of RT #1 [2, 1750] RVT-GII GIIM Feature: gene Location: 2-142 bp Feature: gene Location: 148-291 bp Feature: gene Location: 503-1750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-1364 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 707-13 64 bp Feature: domain Description: GIIM Note: maturase Location: 1445-1676 bp Feature: domain Description: GIIM Note: maturase Location: 1445-1676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)