myRT

myRT report for GCA_001571595.1_ASM157159v1

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Seq: LRXQ01000021.1 Escherichia coli strain CD121 NODE_131_length_186877_cov_90.303673, whole genome shotgun sequence (186937 bp)
Overview 1 RT 1: 157375-161760 bp Neighborhood of RT #1 [157375, 161783] HTH_XRE RVT-Retrons PRK13889 TraD Feature: gene Location: 157375-157590 bp Feature: gene Location: 157681-157962 bp Ori: KXL32819.1 Feature: domain Description: HTH_XRE Location: 157696-157861 bp Feature: domain Description: HTH_XRE Location: 1 57696-1 57861 bp Feature: gene Location: 157955-159055 bp Ori: KXL32820.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 158096-158648 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 58096-1 58648 bp Feature: gene Location: 159132-160634 bp Ori: KXL32821.1 Feature: domain Description: PRK13889 Location: 159135-159714 bp Feature: domain Description: PRK1 3889 Location: 1 591 35-1 5971 4 bp Feature: gene Location: 161472-161783 bp Ori: KXL32822.1 Feature: domain Description: TraD Location: 161586-161760 bp Feature: domain Description: TraD Location: 1 61 586-1 61 760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional), TraD (pfam06412)

Seq: LRXQ01000027.1 Escherichia coli strain CD121 NODE_145_length_108710_cov_86.972183, whole genome shotgun sequence (108770 bp)
Overview 1 RT 1: 14716-21107 bp Neighborhood of RT #1 [14716, 21133] YesN YesN YesM RVT-GII GIIM RVT-GII PFLE_PFLC Feature: gene Location: 14716-15771 bp Ori: KXL31829.1 Feature: domain Description: YesN Location: 14719-15118 bp Feature: domain Description: YesN Location: 14719-15118 bp Feature: domain Description: YesN Location: 15451-15748 bp Feature: domain Description: YesN Location: 15451-15748 bp Feature: gene Location: 15788-17017 bp Ori: KXL31830.1 Feature: domain Description: YesM Location: 16268-17009 bp Feature: domain Description: YesM Location: 162 68-17009 bp Feature: gene Location: 17600-18121 bp Ori: KXL31831.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17606-17888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17606-17888 bp Feature: domain Description: GIIM Note: maturase Location: 17936-18116 bp Feature: domain Description: GIIM Note: maturase Location: 17936-18116 bp Feature: gene Location: 18149-18688 bp Ori: KXL31832.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18479-18557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18479-18557 bp Feature: gene Location: 19174-20079 bp Feature: gene Location: 20216-21133 bp Ori: KXL31834.1 Feature: domain Description: PFLE_PFLC Location: 20252-21107 bp Feature: domain Description: PFLE_PFLC Location: 2 02 52 -2 1107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesN (COG4753), YesM (COG2972), RVT-GII, GIIM (pfam08388), PFLE_PFLC (TIGR02494)

Seq: LRXQ01000098.1 Escherichia coli strain CD121 NODE_87_length_2443_cov_449.713470, whole genome shotgun sequence (2503 bp)
Overview 1 RT 1: 223-2166 bp Neighborhood of RT #1 [223, 2411] RVT-GII GIIM Feature: gene Location: 223-594 bp Feature: gene Location: 509-934 bp Feature: gene Location: 903-2411 bp Ori: KXL22934.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161-1893 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1161-1893 bp Feature: domain Description: GIIM Note: maturase Location: 1968-2166 bp Feature: domain Description: GIIM Note: maturase Location: 1968-2166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)