myRT

myRT report for GCA_001571685.1_ASM157168v1

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Seq: LRXV01000121.1 Escherichia coli strain CD26 NODE_39_length_2183_cov_128.868073, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-2271 bp Neighborhood of RT #1 [92, 2271] RVT-GII GIIM Feature: gene Location: 92-1600 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350-1 082 bp Feature: domain Description: GIIM Note: maturase Location: 1157-1355 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 57-1 355 bp Feature: gene Location: 1569-1994 bp Feature: gene Location: 1909-2271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LRXV01000136.1 Escherichia coli strain CD26 NODE_52_length_11504_cov_34.492352, whole genome shotgun sequence (11592 bp)
Overview 1 RT 1: 1185-8984 bp Neighborhood of RT #1 [1185, 9052] TIGR02646 COG3950 RVT-Retrons SSL2 HTH_18 Feature: gene Location: 1185-1835 bp Feature: domain Description: TIGR02646 Location: 1251-1656 bp Feature: domain Description: TIGR02 646 Location: 12 51-1656 bp Feature: gene Location: 1838-3490 bp Feature: domain Description: COG3950 Location: 2036-3452 bp Feature: domain Description: COG3950 Location: 2 036-3452 bp Feature: gene Location: 3487-4422 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3589-4189 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3589-4189 bp Feature: gene Location: 5151-8141 bp Feature: domain Description: SSL2 Location: 5307-6285 bp Feature: domain Description: SSL2 Location: 5307-62 85 bp Feature: gene Location: 8873-9052 bp Feature: domain Description: HTH_18 Location: 8876-8984 bp Feature: domain Description: HTH_18 Location: 8876-8984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SSL2 (COG1061), HTH_18 (pfam12833)

Seq: LRXV01000006.1 Escherichia coli strain CD26 NODE_105_length_106340_cov_32.567314, whole genome shotgun sequence (106428 bp)
Overview 1 RT 1: 64347-71106 bp Neighborhood of RT #1 [64347, 71108] WcaA RVT-GII DDE_Tnp_1_assoc gnd Feature: gene Location: 64347-65129 bp Feature: domain Description: WcaA Location: 64368-65064 bp Feature: domain Description: WcaA Location: 643 68-65064 bp Feature: gene Location: 65134-66339 bp Feature: gene Location: 66876-68197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67152-67518 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67152-67518 bp Feature: gene Location: 68404-69548 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 68425-68686 bp Feature: domain Description: DDE_Tnp_1_assoc Location: 68425-68686 bp Feature: gene Location: 69702-71108 bp Feature: domain Description: gnd Location: 69717-71106 bp Feature: domain Description: gnd Location: 69717-71106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WcaA (TIGR04017), RVT-GII, DDE_Tnp_1_assoc (pfam13808), gnd (TIGR00873)