myRT

myRT report for GCA_001572605.1_ASM157260v1

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Seq: LPZJ01000152.1 Escherichia coli strain CFSAN025138 5019-A_contig_237_96.08, whole genome shotgun sequence (6853 bp)
Overview 1 RT 1: 1817-6835 bp Neighborhood of RT #1 [1817, 6835] PRK15223 AfaD-like RVT-UG4 Feature: gene Location: 1817-4402 bp Ori: KXN57848.1 Feature: domain Description: PRK15223 Location: 1865-4397 bp Feature: domain Description: PRK1 5223 Location: 1 865-4397 bp Feature: gene Location: 4477-4869 bp Ori: KXN57852.1 Feature: domain Description: AfaD-like Location: 4504-4849 bp Feature: domain Description: AfaD-like Location: 4504-4849 bp Feature: gene Location: 5334-5750 bp Ori: KXN57849.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5364-5745 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 5364-5745 bp Feature: gene Location: 5887-6387 bp Feature: gene Location: 6623-6835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15223 (fimbrial biogenesis outer membrane usher protein), AfaD-like (cd18776), RVT-UG4

Seq: LPZJ01000194.1 Escherichia coli strain CFSAN025138 5019-A_contig_275_61.74, whole genome shotgun sequence (1376 bp)
Overview 1 RT 1: 192-1376 bp Neighborhood of RT #1 [192, 1376] RVT_N RVT-GII Feature: gene Location: 192-1133 bp Feature: domain Description: RVT_N Location: 246-489 bp Feature: domain Description: RVT_N Location: 2 46-489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534-1134 bp Feature: gene Location: 1177-1376 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII