myRT

myRT report for GCA_001573985.1_ASM157398v1

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Seq: LFPS01000002.1 Clostridium botulinum strain SU1887 U21069_2, whole genome shotgun sequence (456090 bp)
Overview 1 RT 1: 68439-74019 bp Neighborhood of RT #1 [68439, 74019] DUF45 RVT-GII GIIM Feature: gene Location: 68439-69167 bp Feature: domain Description: DUF45 Location: 68526-69156 bp Feature: domain Description: DUF45 Location: 68526-691 56 bp Feature: gene Location: 69203-69583 bp Feature: gene Location: 71104-72414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71401-72064 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 401 -72064 bp Feature: domain Description: GIIM Note: maturase Location: 72148-72352 bp Feature: domain Description: GIIM Note: maturase Location: 721 48-72352 bp Feature: gene Location: 73519-73824 bp Feature: gene Location: 73873-74019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF45 (pfam01863), RVT-GII, GIIM (pfam08388)

Seq: LFPS01000006.1 Clostridium botulinum strain SU1887 U21069_6, whole genome shotgun sequence (946946 bp)
Overview 1 RT 1: 148523-152047 bp 2 RT 2: 874909-880759 bp Neighborhood of RT #1 [148523, 152047] OmpR HD_3 RVT_N RVT-GII GIIM HNHc Neighborhood of RT #2 [874909, 880923] GIY-YIG_LuxR_like RVT_N RVT-GII GIIM McrA PcnB YcgL Feature: gene Location: 148523-148663 bp Feature: domain Description: OmpR Location: 148529-148652 bp Feature: domain Description: OmpR Location: 14852 9-148652 bp Feature: gene Location: 148756-149316 bp Feature: domain Description: HD_3 Location: 148795-149269 bp Feature: domain Description: HD_3 Location: 148795-1492 69 bp Feature: gene Location: 149870-151078 bp Feature: RT Description: RVT_N Location: 149927-150164 bp Feature: RT Description: RVT_N Location: 14992 7-150164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150227-150881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1502 2 7-150881 bp Feature: domain Description: GIIM Note: maturase Location: 150944-151064 bp Feature: domain Description: GIIM Note: maturase Location: 150944-151064 bp Feature: gene Location: 151251-151691 bp Feature: domain Description: HNHc Note: nucleases Location: 151380-151545 bp Feature: domain Description: HNHc Note: nucleases Location: 151380-151545 bp Feature: gene Location: 151832-152047 bp Feature: gene Location: 874909-875268 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 874930-875224 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 874930-8752 2 4 bp Feature: gene Location: 875339-875821 bp Feature: gene Location: 876117-877769 bp Feature: RT Description: RVT_N Location: 876120-876246 bp Feature: RT Description: RVT_N Location: 87612 0-8762 46 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876306-876957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 876306-876957 bp Feature: domain Description: GIIM Note: maturase Location: 877020-877254 bp Feature: domain Description: GIIM Note: maturase Location: 87702 0-8772 54 bp Feature: domain Description: McrA Location: 877353-877668 bp Feature: domain Description: McrA Location: 877353-877668 bp Feature: gene Location: 878571-879923 bp Feature: domain Description: PcnB Location: 878610-879873 bp Feature: domain Description: PcnB Location: 878610-879873 bp Feature: gene Location: 879913-880923 bp Feature: domain Description: YcgL Location: 879976-880759 bp Feature: domain Description: YcgL Location: 879976-880759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpR (COG0745), HD_3 (pfam13023), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), GIY-YIG_LuxR_like (cd10451), McrA (COG4058), PcnB (COG0617), YcgL (pfam05166)