myRT

myRT report for GCA_001574015.1_ASM157401v1

Download annotations/find similar RTs

Seq: LFPT01000001.1 Clostridium botulinum strain SU1275 U21070_1, whole genome shotgun sequence (281339 bp)
Overview 1 RT 1: 261521-267371 bp Neighborhood of RT #1 [261521, 267535] GIY-YIG_LuxR_like RVT_N RVT-GII GIIM McrA PcnB YcgL Feature: gene Location: 261521-261880 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 261542-261836 bp Feature: domain Description: GIY-YIG_LuxR_like Location: 261 542-261 836 bp Feature: gene Location: 261951-262433 bp Feature: gene Location: 262729-264381 bp Feature: RT Description: RVT_N Location: 262732-262858 bp Feature: RT Description: RVT_N Location: 262732-262858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 262918-263569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26291 8-263569 bp Feature: domain Description: GIIM Note: maturase Location: 263632-263866 bp Feature: domain Description: GIIM Note: maturase Location: 263632-263866 bp Feature: domain Description: McrA Location: 263965-264280 bp Feature: domain Description: McrA Location: 263965-264280 bp Feature: gene Location: 265183-266535 bp Feature: domain Description: PcnB Location: 265222-266485 bp Feature: domain Description: PcnB Location: 265222-266485 bp Feature: gene Location: 266525-267535 bp Feature: domain Description: YcgL Location: 266588-267371 bp Feature: domain Description: YcgL Location: 266588-267371 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_LuxR_like (cd10451), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PcnB (COG0617), YcgL (pfam05166)

Seq: LFPT01000025.1 Clostridium botulinum strain SU1275 U21070_25, whole genome shotgun sequence (26228 bp)
Overview 1 RT 1: 15215-20795 bp Neighborhood of RT #1 [15215, 20795] DUF45 RVT-GII GIIM Feature: gene Location: 15215-15943 bp Feature: domain Description: DUF45 Location: 15302-15932 bp Feature: domain Description: DUF45 Location: 15302 -15932 bp Feature: gene Location: 15979-16359 bp Feature: gene Location: 17880-19190 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18177-18840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18177-18840 bp Feature: domain Description: GIIM Note: maturase Location: 18924-19128 bp Feature: domain Description: GIIM Note: maturase Location: 1892 4-1912 8 bp Feature: gene Location: 20295-20600 bp Feature: gene Location: 20649-20795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF45 (pfam01863), RVT-GII, GIIM (pfam08388)

Seq: LFPT01000006.1 Clostridium botulinum strain SU1275 U21070_6, whole genome shotgun sequence (536794 bp)
Overview 1 RT 1: 389785-393029 bp Neighborhood of RT #1 [389785, 393076] HNHc RVT_N RVT-GII GIIM HD_3 Feature: gene Location: 389785-390000 bp Feature: gene Location: 390141-390581 bp Feature: domain Description: HNHc Note: nucleases Location: 390270-390435 bp Feature: domain Description: HNHc Note: nucleases Location: 3 90270-3 9043 5 bp Feature: gene Location: 390754-391962 bp Feature: RT Description: RVT_N Location: 390811-391048 bp Feature: RT Description: RVT_N Location: 3 90811-3 91048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 391111-391765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 91111-3 91765 bp Feature: domain Description: GIIM Note: maturase Location: 391828-391948 bp Feature: domain Description: GIIM Note: maturase Location: 3 91828-3 91948 bp Feature: gene Location: 392137-392301 bp Feature: gene Location: 392516-393076 bp Feature: domain Description: HD_3 Location: 392555-393029 bp Feature: domain Description: HD_3 Location: 3 92555-3 93 029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HNHc (smart00507), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HD_3 (pfam13023)