myRT

myRT report for GCA_001574505.1_ASM157450v1

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Seq: LSTN01000054.1 Klebsiella pneumoniae strain U41 Contig147, whole genome shotgun sequence (38474 bp)
Overview 1 RT 1: 704-6170 bp Neighborhood of RT #1 [704, 6187] RVT-UG4 FimD FimC Feature: gene Location: 704-2785 bp Ori: KXO22654.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1115-1559 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 1 1 5-1 559 bp Feature: gene Location: 2782-5376 bp Ori: KXO22655.1 Feature: domain Description: FimD Location: 2824-5365 bp Feature: domain Description: FimD Location: 2824-5365 bp Feature: gene Location: 5423-6187 bp Ori: KXO22656.1 Feature: domain Description: FimC Location: 5468-6170 bp Feature: domain Description: FimC Location: 5468-61 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: LSTN01000086.1 Klebsiella pneumoniae strain U41 Contig176, whole genome shotgun sequence (21518 bp)
Overview 1 RT 1: 14010-19094 bp Neighborhood of RT #1 [14010, 19099] GT9_LPS_heptosyltransferase DinI RVT-GII ArdC Feature: gene Location: 14010-15149 bp Ori: KXO21659.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 14193-15093 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 14193-15093 bp Feature: gene Location: 15320-15562 bp Ori: KXO21660.1 Feature: domain Description: DinI Location: 15371-15551 bp Feature: domain Description: DinI Location: 15371-15551 bp Feature: gene Location: 16180-17664 bp Ori: KXO21661.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16582-17272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16582 -172 72 bp Feature: gene Location: 17657-17926 bp Feature: gene Location: 18134-19099 bp Ori: KXO21663.1 Feature: domain Description: ArdC Location: 18260-19094 bp Feature: domain Description: ArdC Location: 182 60-19094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, ArdC (COG4227)