myRT

myRT report for GCA_001575355.1_ASM157535v1

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Seq: LONZ01000001.1 Escherichia coli strain G190 Escherichia_coli_G190.contig.001, whole genome shotgun sequence (133557 bp)
Overview 1 RT 1: 18406-25357 bp Neighborhood of RT #1 [18406, 25368] COG5301 Caudo_TAP RVT-Retrons AAA_15 FI Feature: gene Location: 18406-19242 bp Feature: domain Description: COG5301 Location: 18595-19021 bp Feature: domain Description: COG5301 Location: 1 8595-1 9021 bp Feature: gene Location: 19246-19773 bp Feature: domain Description: Caudo_TAP Location: 19366-19771 bp Feature: domain Description: Caudo_TAP Location: 1 9366-1 9771 bp Feature: gene Location: 20196-21293 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20364-20910 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 20364-2091 0 bp Feature: gene Location: 21414-23678 bp Feature: domain Description: AAA_15 Location: 21417-22440 bp Feature: domain Description: AAA_1 5 Location: 21 41 7-22440 bp Feature: gene Location: 24178-25368 bp Feature: domain Description: FI Location: 24181-25357 bp Feature: domain Description: FI Location: 241 81 -25357 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5301 (Phage-related tail fibre protein ), Caudo_TAP (pfam02413), RVT-Retrons, AAA_15 (pfam13175), FI (PHA02560)

Seq: LONZ01000057.1 Escherichia coli strain G190 Escherichia_coli_G190.contig.057, whole genome shotgun sequence (18028 bp)
Overview 1 RT 1: 8356-11449 bp Neighborhood of RT #1 [8356, 11449] PHA02517 RVT-GII GIIM Feature: gene Location: 8356-8613 bp Feature: gene Location: 8696-9183 bp Feature: domain Description: PHA02517 Location: 8699-8870 bp Feature: domain Description: PHA02 517 Location: 8699-8870 bp Feature: gene Location: 9264-10772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9522-10254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 952 2 -102 54 bp Feature: domain Description: GIIM Note: maturase Location: 10329-10527 bp Feature: domain Description: GIIM Note: maturase Location: 1032 9-1052 7 bp Feature: gene Location: 10741-11166 bp Feature: gene Location: 11081-11449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)