myRT

myRT report for GCA_001575455.1_ASM157545v1

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Seq: LOOG01000029.1 Escherichia coli strain G211 Escherichia_coli_G211.contig.029, whole genome shotgun sequence (127077 bp)
Overview 1 RT 1: 118380-125305 bp Neighborhood of RT #1 [118380, 126195] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 118380-119399 bp Ori: KXQ16569.1 Feature: domain Description: Q Location: 118383-119394 bp Feature: domain Description: Q Location: 1 1 8383-1 1 9394 bp Feature: gene Location: 119442-120149 bp Feature: gene Location: 120146-121372 bp Ori: KXQ16571.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 120332-120914 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 20332-1 2091 4 bp Feature: gene Location: 121887-123431 bp Ori: KXQ16572.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 122304-122757 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 1 22304-1 22757 bp Feature: gene Location: 123597-123815 bp Feature: gene Location: 123919-126195 bp Ori: KXQ16573.1 Feature: domain Description: Phage_GPA Location: 124318-125305 bp Feature: domain Description: Phage_GPA Location: 1 2431 8-1 25305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)

Seq: LOOG01000010.1 Escherichia coli strain G211 Escherichia_coli_G211.contig.010, whole genome shotgun sequence (71690 bp)
Overview 1 RT 1: 54817-59523 bp Neighborhood of RT #1 [54817, 59523] PRK10276 DinI RVT_N RVT-GII YkfC HNHc DUF1281 DUF1281_C Feature: gene Location: 54817-55254 bp Ori: KXQ21118.1 Feature: domain Description: PRK10276 Location: 54874-55240 bp Feature: domain Description: PRK102 76 Location: 54874-552 40 bp Feature: gene Location: 55251-55499 bp Ori: KXQ21119.1 Feature: domain Description: DinI Location: 55308-55488 bp Feature: domain Description: DinI Location: 55308-55488 bp Feature: gene Location: 56522-58246 bp Ori: KXQ21120.1 Feature: domain Description: RVT_N Location: 56579-56816 bp Feature: domain Description: RVT_N Location: 56579-56816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56867-57515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56867-57515 bp Feature: domain Description: YkfC Location: 57647-57803 bp Feature: domain Description: YkfC Location: 57647-57803 bp Feature: domain Description: HNHc Note: nucleases Location: 58031-58190 bp Feature: domain Description: HNHc Note: nucleases Location: 58031-58190 bp Feature: gene Location: 58323-59222 bp Ori: KXQ21121.1 Feature: domain Description: DUF1281 Location: 58392-58920 bp Feature: domain Description: DUF12 81 Location: 58392 -5892 0 bp Feature: domain Description: DUF1281_C Location: 58926-59166 bp Feature: domain Description: DUF12 81_C Location: 5892 6-59166 bp Feature: gene Location: 59212-59523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), DinI (pfam06183), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406)