myRT

myRT report for GCA_001575475.1_ASM157547v1

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Seq: LOOI01000046.1 Escherichia coli strain G214 Escherichia_coli_G214.contig.046, whole genome shotgun sequence (108452 bp)
Overview 1 RT 1: 59424-63306 bp Neighborhood of RT #1 [59424, 63311] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 59424-60140 bp Feature: domain Description: rph Location: 59427-60135 bp Feature: domain Description: rph Location: 59427-601 35 bp Feature: gene Location: 60206-60847 bp Feature: domain Description: pyrE Location: 60209-60842 bp Feature: domain Description: pyrE Location: 60209-60842 bp Feature: gene Location: 61145-62104 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61280-61829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 61 280-61 829 bp Feature: gene Location: 62150-62746 bp Feature: domain Description: slmA Location: 62156-62732 bp Feature: domain Description: slmA Location: 621 56-62732 bp Feature: gene Location: 62853-63311 bp Feature: domain Description: dut Location: 62859-63306 bp Feature: domain Description: dut Location: 62859-63306 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: LOOI01000077.1 Escherichia coli strain G214 Escherichia_coli_G214.contig.077, whole genome shotgun sequence (12704 bp)
Overview 1 RT 1: 9382-12259 bp Neighborhood of RT #1 [9382, 12429] RVT-GII RVT-GII GIIM Feature: gene Location: 9382-9726 bp Feature: gene Location: 9936-10274 bp Feature: gene Location: 11171-11605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11363-11579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11363-11579 bp Feature: gene Location: 11623-12429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11626-11989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1162 6-11989 bp Feature: domain Description: GIIM Note: maturase Location: 12037-12259 bp Feature: domain Description: GIIM Note: maturase Location: 12 037-12 2 59 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)