myRT

myRT report for GCA_001575545.1_ASM157554v1

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Seq: LOOH01000118.1 Escherichia coli strain G213 Escherichia_coli_G213.contig.118, whole genome shotgun sequence (2446 bp)
Overview 1 RT 1: 312-1969 bp Neighborhood of RT #1 [312, 2214] RVT-GII GIIM Feature: gene Location: 312-737 bp Feature: gene Location: 706-2214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 964-1 696 bp Feature: domain Description: GIIM Note: maturase Location: 1771-1969 bp Feature: domain Description: GIIM Note: maturase Location: 1 771 -1 969 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LOOH01000014.1 Escherichia coli strain G213 Escherichia_coli_G213.contig.014, whole genome shotgun sequence (17407 bp)
Overview 1 RT 1: 9468-14782 bp Neighborhood of RT #1 [9468, 14787] RVT-GII RVT-GII GIIM LacI PBP1_GntR PtsN Feature: gene Location: 9468-9812 bp Feature: gene Location: 10022-10360 bp Feature: gene Location: 11257-11691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11449-11665 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11449-11665 bp Feature: gene Location: 11709-12515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11712-12075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11712 -12 075 bp Feature: domain Description: GIIM Note: maturase Location: 12123-12345 bp Feature: domain Description: GIIM Note: maturase Location: 12 12 3-12 345 bp Feature: gene Location: 13042-14073 bp Feature: domain Description: LacI Location: 13084-13219 bp Feature: domain Description: LacI Location: 13084-132 19 bp Feature: domain Description: PBP1_GntR Location: 13258-14068 bp Feature: domain Description: PBP1_GntR Location: 132 58-14068 bp Feature: gene Location: 14344-14787 bp Feature: domain Description: PtsN Location: 14347-14782 bp Feature: domain Description: PtsN Location: 14347-14782 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), LacI (pfam00356), PBP1_GntR (cd01575), PtsN (COG1762)

Seq: LOOH01000017.1 Escherichia coli strain G213 Escherichia_coli_G213.contig.017, whole genome shotgun sequence (263380 bp)
Overview 1 RT 1: 607-4633 bp Neighborhood of RT #1 [607, 4635] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 607-2211 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 898-1489 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 898-1489 bp Feature: domain Description: TIR_2 Location: 1816-2149 bp Feature: domain Description: TIR_2 Location: 1816-2149 bp Feature: gene Location: 2569-2829 bp Feature: domain Description: PRK10597 Location: 2572-2812 bp Feature: domain Description: PRK10597 Location: 2572-2812 bp Feature: gene Location: 3049-4635 bp Feature: domain Description: prfC Location: 3067-4633 bp Feature: domain Description: prfC Location: 3 067-463 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503), RVT-Retrons, TIR_2 (pfam13676)