myRT

myRT report for GCA_001575965.1_ASM157596v1

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Seq: LONS01000004.1 Escherichia coli strain G177 Escherichia_coli_G177.contig.004, whole genome shotgun sequence (8931 bp)
Overview 1 RT 1: 1-1877 bp Neighborhood of RT #1 [1, 1879] RVT-GII PHA02517 InsE Feature: gene Location: 1-467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 259-442 bp Feature: gene Location: 1074-1553 bp Feature: domain Description: PHA02517 Location: 1134-1488 bp Feature: domain Description: PHA0251 7 Location: 1 1 34-1 488 bp Feature: gene Location: 1553-1879 bp Feature: domain Description: InsE Location: 1556-1877 bp Feature: domain Description: InsE Location: 1 556-1 877 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, InsE (COG2963)

Seq: LONS01000136.1 Escherichia coli strain G177 Escherichia_coli_G177.contig.136, whole genome shotgun sequence (11121 bp)
Overview 1 RT 1: 793-8581 bp Neighborhood of RT #1 [793, 8649] TIGR02646 COG3950 RVT-Retrons SSL2 HTH_18 Feature: gene Location: 793-1443 bp Feature: domain Description: TIGR02646 Location: 859-1264 bp Feature: domain Description: TIGR02 646 Location: 859-12 64 bp Feature: gene Location: 1446-3098 bp Feature: domain Description: COG3950 Location: 1644-3060 bp Feature: domain Description: COG3950 Location: 1644-3060 bp Feature: gene Location: 3095-4030 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3197-3797 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3197-3797 bp Feature: gene Location: 4748-7738 bp Feature: domain Description: SSL2 Location: 4904-5882 bp Feature: domain Description: SSL2 Location: 4904-5882 bp Feature: gene Location: 8470-8649 bp Feature: domain Description: HTH_18 Location: 8473-8581 bp Feature: domain Description: HTH_18 Location: 8473-8581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, SSL2 (COG1061), TIGR02646 (TIGR02646 family protein)

Seq: LONS01000106.1 Escherichia coli strain G177 Escherichia_coli_G177.contig.106, whole genome shotgun sequence (965 bp)
Overview 1 RT 1: 93-741 bp Neighborhood of RT #1 [93, 965] RVT-GII GIIM Feature: gene Location: 93-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-447 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96-447 bp Feature: domain Description: GIIM Note: maturase Location: 522-741 bp Feature: domain Description: GIIM Note: maturase Location: 522-741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LONS01000168.1 Escherichia coli strain G177 Escherichia_coli_G177.contig.168, whole genome shotgun sequence (317 bp)
Overview 1 RT 1: 1-310 bp Neighborhood of RT #1 [1, 317] RVT-GII Feature: gene Location: 1-317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130-310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130-310 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII