myRT

myRT report for GCA_001576015.1_ASM157601v1

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Seq: LOPF01000049.1 Escherichia coli strain G310 Escherichia_coli_G310.contig.049, whole genome shotgun sequence (9768 bp)
Overview 1 RT 1: 1-2801 bp Neighborhood of RT #1 [1, 2801] RVT-GII GIIM RVT-GII Feature: gene Location: 1-560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-367 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-367 bp Feature: domain Description: GIIM Note: maturase Location: 415-550 bp Feature: domain Description: GIIM Note: maturase Location: 41 5-550 bp Feature: gene Location: 578-1012 bp Ori: KXR25127.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 770-986 bp Feature: gene Location: 1909-2247 bp Feature: gene Location: 2457-2801 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LOPF01000009.1 Escherichia coli strain G310 Escherichia_coli_G310.contig.009, whole genome shotgun sequence (98596 bp)
Overview 1 RT 1: 20711-27088 bp Neighborhood of RT #1 [20711, 27108] XdhC PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Psu Feature: gene Location: 20711-21667 bp Ori: KXR31753.1 Feature: domain Description: XdhC Location: 20789-21644 bp Feature: domain Description: XdhC Location: 2 0789-2 1644 bp Feature: gene Location: 21646-22056 bp Ori: KXR31754.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 21718-22030 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 2 1718-2 2 030 bp Feature: gene Location: 22598-24616 bp Ori: KXR31755.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 23171-23624 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 3171-2 362 4 bp Feature: gene Location: 24607-25884 bp Ori: KXR31756.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 24895-25390 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 4895-2 5390 bp Feature: gene Location: 26279-26551 bp Ori: KXR31757.1 Feature: domain Description: PRK09678 Location: 26288-26453 bp Feature: domain Description: PRK09678 Location: 2 62 88-2 6453 bp Feature: gene Location: 26557-27108 bp Ori: KXR31758.1 Feature: domain Description: Psu Location: 26578-27088 bp Feature: domain Description: Psu Location: 2 6578-2 7088 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional), Psu (pfam07455)