myRT

myRT report for GCA_001576095.1_ASM157609v1

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Seq: LOPE01000053.1 Escherichia coli strain G303 Escherichia_coli_G303.contig.053, whole genome shotgun sequence (36457 bp)
Overview 1 RT 1: 33508-36147 bp Neighborhood of RT #1 [33508, 36185] PRK09738 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 33508-33718 bp Feature: gene Location: 33762-33941 bp Feature: domain Description: PRK09738 Location: 33765-33918 bp Feature: domain Description: PRK09738 Location: 33765-3391 8 bp Feature: gene Location: 34497-36185 bp Feature: RT Description: RVT_N Location: 34557-34800 bp Feature: RT Description: RVT_N Location: 34557-34800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34845-35487 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34845-35487 bp Feature: domain Description: GIIM Note: maturase Location: 35541-35772 bp Feature: domain Description: GIIM Note: maturase Location: 35541 -35772 bp Feature: domain Description: HNHc Note: nucleases Location: 35985-36147 bp Feature: domain Description: HNHc Note: nucleases Location: 35985-361 47 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09738 (small toxic polypeptide; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: LOPE01000005.1 Escherichia coli strain G303 Escherichia_coli_G303.contig.005, whole genome shotgun sequence (232989 bp)
Overview 1 RT 1: 56787-60728 bp Neighborhood of RT #1 [56787, 60934] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 56787-56975 bp Feature: gene Location: 57054-57254 bp Feature: gene Location: 57682-58617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57784-58378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57784-58378 bp Feature: gene Location: 58614-60269 bp Feature: domain Description: COG3950 Location: 58770-60216 bp Feature: domain Description: COG3950 Location: 58770-602 16 bp Feature: gene Location: 60266-60934 bp Feature: domain Description: TIGR02646 Location: 60332-60728 bp Feature: domain Description: TIGR02 646 Location: 60332 -6072 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)