myRT

myRT report for GCA_001576305.1_ASM157630v1

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Seq: LOOF01000020.1 Escherichia coli strain G207 Escherichia_coli_G207.contig.020, whole genome shotgun sequence (127077 bp)
Overview 1 RT 1: 883-8693 bp Neighborhood of RT #1 [883, 8698] Phage_GPA RVT-AbiP2 RVT-Retrons Q Feature: gene Location: 883-3159 bp Ori: KXR95437.1 Feature: domain Description: Phage_GPA Location: 1282-2269 bp Feature: domain Description: Phage_GPA Location: 1 282-2269 bp Feature: gene Location: 3263-3481 bp Feature: gene Location: 3647-5191 bp Ori: KXR95438.1 Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 4064-4517 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 4064-451 7 bp Feature: gene Location: 5706-6932 bp Ori: KXR95439.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5892-6474 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5892-6474 bp Feature: gene Location: 6929-7636 bp Feature: gene Location: 7679-8698 bp Ori: KXR95441.1 Feature: domain Description: Q Location: 7682-8693 bp Feature: domain Description: Q Location: 7682-8693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-AbiP2, RVT-Retrons, Q (PHA02536)

Seq: LOOF01000007.1 Escherichia coli strain G207 Escherichia_coli_G207.contig.007, whole genome shotgun sequence (66975 bp)
Overview 1 RT 1: 7453-12145 bp Neighborhood of RT #1 [7453, 12159] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc DinI PRK10276 Feature: gene Location: 7453-7764 bp Feature: gene Location: 7754-8653 bp Ori: KXR98767.1 Feature: domain Description: DUF1281 Location: 7823-8351 bp Feature: domain Description: DUF12 81 Location: 782 3-8351 bp Feature: domain Description: DUF1281_C Location: 8357-8597 bp Feature: domain Description: DUF12 81_C Location: 8357-8597 bp Feature: gene Location: 8730-10454 bp Ori: KXR98768.1 Feature: domain Description: RVT_N Location: 8787-9024 bp Feature: domain Description: RVT_N Location: 8787-902 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9075-9723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9075-972 3 bp Feature: domain Description: YkfC Location: 9855-10011 bp Feature: domain Description: YkfC Location: 9855-10011 bp Feature: domain Description: HNHc Note: nucleases Location: 10239-10398 bp Feature: domain Description: HNHc Note: nucleases Location: 102 39-10398 bp Feature: gene Location: 11477-11725 bp Ori: KXR98769.1 Feature: domain Description: DinI Location: 11534-11714 bp Feature: domain Description: DinI Location: 11534-11714 bp Feature: gene Location: 11722-12159 bp Ori: KXR98770.1 Feature: domain Description: PRK10276 Location: 11779-12145 bp Feature: domain Description: PRK102 76 Location: 11779-12 145 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)