myRT

myRT report for GCA_001576315.1_ASM157631v1

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Seq: LONW01000056.1 Escherichia coli strain G187 Escherichia_coli_G187.contig.056, whole genome shotgun sequence (17288 bp)
Overview 1 RT 1: 7218-15052 bp Neighborhood of RT #1 [7218, 15081] ESPR O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT autotrans_barl DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 7218-11141 bp Feature: domain Description: ESPR Location: 7221-7290 bp Feature: domain Description: ESPR Location: 7221 -7290 bp Feature: domain Description: O_hepto_targRPT Location: 7386-7497 bp Feature: domain Description: O_hepto_targRPT Location: 7386-7497 bp Feature: domain Description: O_hepto_targRPT Location: 7503-7611 bp Feature: domain Description: O_hepto_targRPT Location: 7503-761 1 bp Feature: domain Description: O_hepto_targRPT Location: 7614-7722 bp Feature: domain Description: O_hepto_targRPT Location: 761 4-7722 bp Feature: domain Description: O_hepto_targRPT Location: 7734-7836 bp Feature: domain Description: O_hepto_targRPT Location: 7734-7836 bp Feature: domain Description: O_hepto_targRPT Location: 7839-7947 bp Feature: domain Description: O_hepto_targRPT Location: 7839-7947 bp Feature: domain Description: O_hepto_targRPT Location: 7953-8061 bp Feature: domain Description: O_hepto_targRPT Location: 7953-8061 bp Feature: domain Description: O_hepto_targRPT Location: 8067-8175 bp Feature: domain Description: O_hepto_targRPT Location: 8067-81 75 bp Feature: domain Description: O_hepto_targRPT Location: 8184-8289 bp Feature: domain Description: O_hepto_targRPT Location: 81 84-8289 bp Feature: domain Description: O_hepto_targRPT Location: 8292-8400 bp Feature: domain Description: O_hepto_targRPT Location: 8292-8400 bp Feature: domain Description: O_hepto_targRPT Location: 8403-8514 bp Feature: domain Description: O_hepto_targRPT Location: 8403-851 4 bp Feature: domain Description: O_hepto_targRPT Location: 8517-8628 bp Feature: domain Description: O_hepto_targRPT Location: 851 7-8628 bp Feature: domain Description: O_hepto_targRPT Location: 8631-8739 bp Feature: domain Description: O_hepto_targRPT Location: 8631 -8739 bp Feature: domain Description: O_hepto_targRPT Location: 8742-8847 bp Feature: domain Description: O_hepto_targRPT Location: 8742-8847 bp Feature: domain Description: O_hepto_targRPT Location: 8853-8961 bp Feature: domain Description: O_hepto_targRPT Location: 8853-8961 bp Feature: domain Description: O_hepto_targRPT Location: 8964-9075 bp Feature: domain Description: O_hepto_targRPT Location: 8964-9075 bp Feature: domain Description: O_hepto_targRPT Location: 9081-9186 bp Feature: domain Description: O_hepto_targRPT Location: 9081 -91 86 bp Feature: domain Description: O_hepto_targRPT Location: 9243-9351 bp Feature: domain Description: O_hepto_targRPT Location: 9243-9351 bp Feature: domain Description: autotrans_barl Location: 9816-11139 bp Feature: domain Description: autotrans_barl Location: 981 6-1 1 1 39 bp Feature: gene Location: 11319-11510 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11376-11487 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 376-1 1 487 bp Feature: gene Location: 11581-12813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11782-12436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 782-1 2436 bp Feature: domain Description: GIIM Note: maturase Location: 12514-12736 bp Feature: domain Description: GIIM Note: maturase Location: 1 251 4-1 2736 bp Feature: gene Location: 13278-14714 bp Feature: domain Description: LZ_Tnp_IS66 Location: 13416-13641 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 341 6-1 3641 bp Feature: domain Description: zf-IS66 Location: 13662-13794 bp Feature: domain Description: zf-IS66 Location: 1 3662-1 3794 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13839-14676 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 3839-1 4676 bp Feature: gene Location: 14734-15081 bp Feature: domain Description: TnpB_IS66 Location: 14761-15052 bp Feature: domain Description: TnpB_IS66 Location: 1 4761 -1 5052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), ESPR (pfam13018), O_hepto_targRPT (TIGR04415), autotrans_barl (TIGR01414)