myRT

myRT report for GCA_001576435.1_ASM157643v1

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Seq: LOPK01000104.1 Escherichia coli strain G324 Escherichia_coli_G324.contig.104, whole genome shotgun sequence (4560 bp)
Overview 1 RT 1: 167-3703 bp Neighborhood of RT #1 [167, 4560] PRK09678 RVT-Retrons Arm-DNA-bind_3 Feature: gene Location: 167-439 bp Ori: KXR76870.1 Feature: domain Description: PRK09678 Location: 176-332 bp Feature: domain Description: PRK09678 Location: 1 76-332 bp Feature: gene Location: 1085-2053 bp Feature: gene Location: 2055-2987 bp Ori: KXR76872.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2157-2751 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21 57-2751 bp Feature: gene Location: 3442-4560 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3451-3703 bp Feature: domain Description: Arm-DNA-bind_3 Location: 3451 -3703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09678 (DNA-binding transcriptional regulator; Provisional), RVT-Retrons, Arm-DNA-bind_3 (pfam13356)

Seq: LOPK01000028.1 Escherichia coli strain G324 Escherichia_coli_G324.contig.028, whole genome shotgun sequence (74442 bp)
Overview 1 RT 1: 20875-29308 bp Neighborhood of RT #1 [20875, 29310] phage_tail_N Peptidase_S74 APC_N_CC RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 20875-21870 bp Feature: domain Description: phage_tail_N Location: 20884-21283 bp Feature: domain Description: phage_tail_N Location: 2 0884-2 12 83 bp Feature: gene Location: 22780-24654 bp Ori: KXR79793.1 Feature: domain Description: Peptidase_S74 Location: 24223-24370 bp Feature: domain Description: Peptidase_S74 Location: 2 42 2 3-2 4370 bp Feature: domain Description: APC_N_CC Location: 24523-24646 bp Feature: domain Description: APC_N_CC Location: 2 452 3-2 4646 bp Feature: gene Location: 25282-26886 bp Ori: KXR79745.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25573-26164 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 5573-2 6164 bp Feature: domain Description: TIR_2 Location: 26491-26824 bp Feature: domain Description: TIR_2 Location: 2 6491-2 682 4 bp Feature: gene Location: 27244-27504 bp Ori: KXR79746.1 Feature: domain Description: PRK10597 Location: 27247-27487 bp Feature: domain Description: PRK10597 Location: 2 72 47-2 7487 bp Feature: gene Location: 27724-29310 bp Ori: KXR79747.1 Gene: prfC Feature: domain Description: prfC Location: 27742-29308 bp Feature: domain Description: prfC Location: 2 7742 -2 9308 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT phage_tail_N (pfam08400), Peptidase_S74 (pfam13884), APC_N_CC (pfam16689), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: LOPK01000014.1 Escherichia coli strain G324 Escherichia_coli_G324.contig.014, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2272 bp Neighborhood of RT #1 [93, 2272] RVT-GII GIIM Feature: gene Location: 93-1601 bp Ori: KXR82158.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351-1083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 51-1083 bp Feature: domain Description: GIIM Note: maturase Location: 1158-1356 bp Feature: domain Description: GIIM Note: maturase Location: 1158-13 56 bp Feature: gene Location: 1570-1995 bp Feature: gene Location: 1910-2272 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: LOPK01000021.1 Escherichia coli strain G324 Escherichia_coli_G324.contig.021, whole genome shotgun sequence (93495 bp)
Overview 1 RT 1: 87489-93495 bp Neighborhood of RT #1 [87489, 93495] XdhC PBP2_CrgA_like_5 RVT-UG8 RVT-UG3 PRK09678 Feature: gene Location: 87489-88445 bp Ori: KXR80923.1 Feature: domain Description: XdhC Location: 87567-88422 bp Feature: domain Description: XdhC Location: 87567-884 22 bp Feature: gene Location: 88424-88834 bp Ori: KXR80924.1 Feature: domain Description: PBP2_CrgA_like_5 Location: 88496-88808 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 884 96-88808 bp Feature: gene Location: 89376-91394 bp Ori: KXR80925.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 89949-90402 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 8994 9-904 02 bp Feature: gene Location: 91385-92662 bp Ori: KXR80926.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 91673-92168 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 91673-92168 bp Feature: gene Location: 93057-93329 bp Ori: KXR80927.1 Feature: domain Description: PRK09678 Location: 93066-93231 bp Feature: domain Description: PRK09678 Location: 93066-93231 bp Feature: gene Location: 93335-93495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-UG8, RVT-UG3, PRK09678 (DNA-binding transcriptional regulator; Provisional)