myRT

myRT report for GCA_001576455.1_ASM157645v1

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Seq: LOPO01000091.1 Escherichia coli strain G51 Escherichia_coli_G51.contig.091, whole genome shotgun sequence (58345 bp)
Overview 1 RT 1: 6538-10479 bp Neighborhood of RT #1 [6538, 10685] RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 6538-6726 bp Feature: gene Location: 6805-7005 bp Feature: gene Location: 7433-8368 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7535-8129 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7535-81 29 bp Feature: gene Location: 8365-10020 bp Feature: domain Description: COG3950 Location: 8521-9967 bp Feature: domain Description: COG3950 Location: 8521 -9967 bp Feature: gene Location: 10017-10685 bp Feature: domain Description: TIGR02646 Location: 10083-10479 bp Feature: domain Description: TIGR02646 Location: 1 0083-1 0479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence )

Seq: LOPO01000145.1 Escherichia coli strain G51 Escherichia_coli_G51.contig.145, whole genome shotgun sequence (2363 bp)
Overview 1 RT 1: 83-1733 bp Neighborhood of RT #1 [83, 1771] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1771 bp Feature: RT Description: RVT_N Location: 143-386 bp Feature: RT Description: RVT_N Location: 143-386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431-1073 bp Feature: domain Description: GIIM Note: maturase Location: 1127-1358 bp Feature: domain Description: GIIM Note: maturase Location: 112 7-1358 bp Feature: domain Description: HNHc Note: nucleases Location: 1571-1733 bp Feature: domain Description: HNHc Note: nucleases Location: 1571-1733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)