myRT

myRT report for GCA_001576495.1_ASM157649v1

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Seq: LOPN01000046.1 Escherichia coli strain G43 Escherichia_coli_G43.contig.046, whole genome shotgun sequence (17286 bp)
Overview 1 RT 1: 7217-15051 bp Neighborhood of RT #1 [7217, 15080] ESPR O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT O_hepto_targRPT autotrans_barl DDE_Tnp_IS66_C RVT-GII GIIM LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 TnpB_IS66 Feature: gene Location: 7217-11140 bp Feature: domain Description: ESPR Location: 7220-7289 bp Feature: domain Description: ESPR Location: 7220-7289 bp Feature: domain Description: O_hepto_targRPT Location: 7385-7496 bp Feature: domain Description: O_hepto_targRPT Location: 7385-7496 bp Feature: domain Description: O_hepto_targRPT Location: 7502-7610 bp Feature: domain Description: O_hepto_targRPT Location: 7502-761 0 bp Feature: domain Description: O_hepto_targRPT Location: 7613-7721 bp Feature: domain Description: O_hepto_targRPT Location: 761 3-7721 bp Feature: domain Description: O_hepto_targRPT Location: 7733-7835 bp Feature: domain Description: O_hepto_targRPT Location: 7733-7835 bp Feature: domain Description: O_hepto_targRPT Location: 7838-7946 bp Feature: domain Description: O_hepto_targRPT Location: 7838-7946 bp Feature: domain Description: O_hepto_targRPT Location: 7952-8060 bp Feature: domain Description: O_hepto_targRPT Location: 7952-8060 bp Feature: domain Description: O_hepto_targRPT Location: 8066-8174 bp Feature: domain Description: O_hepto_targRPT Location: 8066-81 74 bp Feature: domain Description: O_hepto_targRPT Location: 8183-8288 bp Feature: domain Description: O_hepto_targRPT Location: 81 83-8288 bp Feature: domain Description: O_hepto_targRPT Location: 8291-8399 bp Feature: domain Description: O_hepto_targRPT Location: 8291 -8399 bp Feature: domain Description: O_hepto_targRPT Location: 8402-8513 bp Feature: domain Description: O_hepto_targRPT Location: 8402-851 3 bp Feature: domain Description: O_hepto_targRPT Location: 8516-8627 bp Feature: domain Description: O_hepto_targRPT Location: 851 6-8627 bp Feature: domain Description: O_hepto_targRPT Location: 8630-8738 bp Feature: domain Description: O_hepto_targRPT Location: 8630-8738 bp Feature: domain Description: O_hepto_targRPT Location: 8741-8846 bp Feature: domain Description: O_hepto_targRPT Location: 8741 -8846 bp Feature: domain Description: O_hepto_targRPT Location: 8852-8960 bp Feature: domain Description: O_hepto_targRPT Location: 8852-8960 bp Feature: domain Description: O_hepto_targRPT Location: 8963-9074 bp Feature: domain Description: O_hepto_targRPT Location: 8963-9074 bp Feature: domain Description: O_hepto_targRPT Location: 9080-9185 bp Feature: domain Description: O_hepto_targRPT Location: 9080-91 85 bp Feature: domain Description: O_hepto_targRPT Location: 9242-9350 bp Feature: domain Description: O_hepto_targRPT Location: 9242-9350 bp Feature: domain Description: autotrans_barl Location: 9815-11138 bp Feature: domain Description: autotrans_barl Location: 981 5-1 1 1 38 bp Feature: gene Location: 11318-11509 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 11375-11486 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 1 375-1 1 486 bp Feature: gene Location: 11580-12812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11781-12435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 781 -1 2435 bp Feature: domain Description: GIIM Note: maturase Location: 12513-12735 bp Feature: domain Description: GIIM Note: maturase Location: 1 251 3-1 2735 bp Feature: gene Location: 13277-14713 bp Feature: domain Description: LZ_Tnp_IS66 Location: 13415-13640 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 341 5-1 3640 bp Feature: domain Description: zf-IS66 Location: 13661-13793 bp Feature: domain Description: zf-IS66 Location: 1 3661 -1 3793 bp Feature: domain Description: DDE_Tnp_IS66 Location: 13838-14675 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 3838-1 4675 bp Feature: gene Location: 14733-15080 bp Feature: domain Description: TnpB_IS66 Location: 14760-15051 bp Feature: domain Description: TnpB_IS66 Location: 1 4760-1 5051 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), TnpB_IS66 (pfam05717), ESPR (pfam13018), O_hepto_targRPT (TIGR04415), autotrans_barl (TIGR01414)