myRT

myRT report for GCA_001577545.1_ASM157754v1

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Seq: LSBN01000049.1 Halanaerobium sp. T82-1 scaffold_226, whole genome shotgun sequence (15947 bp)
Overview 1 RT 1: 13236-15945 bp Neighborhood of RT #1 [13236, 15947] PHA00653 PHA00653 Avd_like RVT-DGRs RVT-DGRs Feature: gene Location: 13236-14273 bp Feature: domain Description: PHA00653 Location: 13407-13779 bp Feature: domain Description: PHA00653 Location: 1 3407-1 3779 bp Feature: domain Description: PHA00653 Location: 13794-14268 bp Feature: domain Description: PHA00653 Location: 1 3794-1 4268 bp Feature: gene Location: 14357-14653 bp Feature: domain Description: Avd_like Location: 14363-14648 bp Feature: domain Description: Avd_like Location: 1 4363-1 4648 bp Feature: gene Location: 15206-15565 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15242-15551 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 5242-1 5551 bp Feature: gene Location: 15744-15947 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 15747-15945 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 5747-1 5945 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs

Seq: LSBN01000028.1 Halanaerobium sp. T82-1 scaffold_150, whole genome shotgun sequence (41470 bp)
Overview 1 RT 1: 35287-41466 bp Neighborhood of RT #1 [35287, 41470] GIY-YIG_COG1833 pcrA RVT-GII Intron_maturas2 HNHc pcrA ligA Feature: gene Location: 35287-35730 bp Feature: domain Description: GIY-YIG_COG1833 Location: 35311-35641 bp Feature: domain Description: GIY-YIG_COG1833 Location: 35311-35641 bp Feature: gene Location: 35761-36534 bp Feature: domain Description: pcrA Location: 35782-36523 bp Feature: domain Description: pcrA Location: 35782 -3652 3 bp Feature: gene Location: 37123-38967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37387-38224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37387-382 2 4 bp Feature: domain Description: Intron_maturas2 Location: 38293-38659 bp Feature: domain Description: Intron_maturas2 Location: 382 93-38659 bp Feature: domain Description: HNHc Note: nucleases Location: 38779-38938 bp Feature: domain Description: HNHc Note: nucleases Location: 38779-38938 bp Feature: gene Location: 39159-40469 bp Feature: domain Description: pcrA Location: 39162-40461 bp Feature: domain Description: pcrA Location: 39162 -40461 bp Feature: gene Location: 40482-41470 bp Feature: domain Description: ligA Location: 40500-41466 bp Feature: domain Description: ligA Location: 40500-41466 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIY-YIG_COG1833 (cd10441), pcrA (TIGR01073), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), ligA (PRK14351)