myRT

myRT report for GCA_001577575.1_ASM157757v1

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Seq: LSRT01000361.1 Marinobacter sp. T13-3 scaffold_474, whole genome shotgun sequence (3445 bp)
Overview 1 RT 1: 287-3422 bp Neighborhood of RT #1 [287, 3445] DUF2188 RVT_N RVT-GII YkfC HNH PRK14104 Feature: gene Location: 287-511 bp Ori: KXS52134.1 Feature: domain Description: DUF2188 Location: 305-482 bp Feature: domain Description: DUF21 88 Location: 305-482 bp Feature: gene Location: 572-2311 bp Ori: KXS52135.1 Feature: domain Description: RVT_N Location: 665-902 bp Feature: domain Description: RVT_N Location: 665-902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953-1598 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953-1 598 bp Feature: domain Description: YkfC Location: 1730-1895 bp Feature: domain Description: YkfC Location: 1 730-1 895 bp Feature: domain Description: HNH Note: nucleases Location: 2123-2258 bp Feature: domain Description: HNH Note: nucleases Location: 21 23-2258 bp Feature: gene Location: 2641-2760 bp Feature: gene Location: 3269-3445 bp Ori: KXS52137.1 Feature: domain Description: PRK14104 Location: 3272-3422 bp Feature: domain Description: PRK1 41 04 Location: 3272-3422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), PRK14104 (chaperonin GroEL; Provisional)

Seq: LSRT01000223.1 Marinobacter sp. T13-3 scaffold_242, whole genome shotgun sequence (5205 bp)
Overview 1 RT 1: 1-3175 bp Neighborhood of RT #1 [1, 3192] RVT-GII GIIM mcbC-like_oxidoreductase Feature: gene Location: 1-95 bp Feature: gene Location: 227-1567 bp Ori: KXS52815.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 536-1154 bp Feature: domain Description: GIIM Note: maturase Location: 1202-1424 bp Feature: domain Description: GIIM Note: maturase Location: 12 02 -142 4 bp Feature: gene Location: 1997-2272 bp Feature: gene Location: 2569-3192 bp Ori: KXS52817.1 Feature: domain Description: mcbC-like_oxidoreductase Location: 2632-3175 bp Feature: domain Description: mcbC-like_oxidoreductase Location: 2 632 -3175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), mcbC-like_oxidoreductase

Seq: LSRT01000379.1 Marinobacter sp. T13-3 scaffold_504, whole genome shotgun sequence (3311 bp)
Overview 1 RT 1: 79-3311 bp Neighborhood of RT #1 [79, 3311] RVT-UG1 Feature: gene Location: 79-1554 bp Ori: KXS52056.1 Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 733-1297 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 73 3 -1297 bp Feature: gene Location: 1565-3311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1

Seq: LSRT01000167.1 Marinobacter sp. T13-3 scaffold_177, whole genome shotgun sequence (8575 bp)
Overview 1 RT 1: 3156-7824 bp Neighborhood of RT #1 [3156, 7829] PTDH LysR RVT-GII IS5 RocR Feature: gene Location: 3156-4166 bp Ori: KXS53204.1 Feature: domain Description: PTDH Location: 3162-4110 bp Feature: domain Description: PTDH Location: 3162-4 110 bp Feature: gene Location: 4160-5020 bp Ori: KXS53205.1 Feature: domain Description: LysR Location: 4169-5012 bp Feature: domain Description: LysR Location: 4 169-5012 bp Feature: gene Location: 4935-5627 bp Ori: KXS53206.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4983-5526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 983-5526 bp Feature: gene Location: 5724-6689 bp Ori: KXS53207.1 Feature: domain Description: IS5 Location: 5913-6684 bp Feature: domain Description: IS5 Location: 5913-6684 bp Feature: gene Location: 6810-7829 bp Ori: KXS53208.1 Feature: domain Description: RocR Location: 6996-7824 bp Feature: domain Description: RocR Location: 6996-7824 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PTDH (cd12157), LysR (COG0583), RVT-GII, IS5 (COG3039), RocR (COG3829)

Seq: LSRT01000009.1 Marinobacter sp. T13-3 scaffold_8, whole genome shotgun sequence (38544 bp)
Overview 1 RT 1: 13898-18359 bp Neighborhood of RT #1 [13898, 18424] Avd_like RVT-DGRs DUF1353 Feature: gene Location: 13898-15847 bp Feature: gene Location: 15844-16242 bp Ori: KXS55182.1 Feature: domain Description: Avd_like Location: 15925-16234 bp Feature: domain Description: Avd_like Location: 15 925 -16234 bp Feature: gene Location: 16520-17539 bp Ori: KXS55183.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16715-17318 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 16715 -17318 bp Feature: gene Location: 17526-18035 bp Feature: gene Location: 18020-18424 bp Ori: KXS55185.1 Feature: domain Description: DUF1353 Location: 18098-18359 bp Feature: domain Description: DUF135 3 Location: 18098-1835 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF1353 (pfam07087)