myRT

myRT report for GCA_001578565.1_ASM157856v1

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Seq: KQ968198.1 Bacteroides thetaiotaomicron strain KLE1254 genomic scaffold Scaffold0, whole genome shotgun sequence (42911 bp)
Overview 1 RT 1: 18691-27228 bp Neighborhood of RT #1 [18691, 27228] RVT-DGRs Feature: gene Location: 18691-21519 bp Feature: gene Location: 21524-24295 bp Feature: gene Location: 24583-25926 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24781-25480 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24781 -25480 bp Feature: gene Location: 25951-26160 bp Feature: gene Location: 26173-27228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: KQ968282.1 Bacteroides thetaiotaomicron strain KLE1254 genomic scaffold Scaffold290, whole genome shotgun sequence (81138 bp)
Overview 1 RT 1: 45499-50090 bp Neighborhood of RT #1 [45499, 50122] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 45499-45867 bp Feature: gene Location: 45926-47254 bp Feature: domain Description: MPTase-PolyVal Location: 46202-46514 bp Feature: domain Description: MPTase-PolyVal Location: 462 02 -46514 bp Feature: gene Location: 47244-49055 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47508-48330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 47508-48330 bp Feature: domain Description: Intron_maturas2 Location: 48471-48711 bp Feature: domain Description: Intron_maturas2 Location: 48471-48711 bp Feature: gene Location: 49186-49443 bp Feature: gene Location: 49619-50122 bp Feature: domain Description: DUF1738 Location: 49673-50090 bp Feature: domain Description: DUF1738 Location: 49673-50090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)

Seq: KQ968305.1 Bacteroides thetaiotaomicron strain KLE1254 genomic scaffold Scaffold508, whole genome shotgun sequence (254693 bp)
Overview 1 RT 1: 174886-186727 bp Neighborhood of RT #1 [174886, 186843] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 SF1_C_Upf1 MTES_1575 DUF3320 rpsA Feature: gene Location: 174886-175086 bp Feature: gene Location: 175515-177674 bp Feature: gene Location: 177880-179013 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 178204-178756 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 178204-178756 bp Feature: gene Location: 179047-184875 bp Feature: domain Description: DUF4011 Location: 180202-180715 bp Feature: domain Description: DUF4011 Location: 180202-180715 bp Feature: domain Description: DEXXQc_SF1 Location: 181054-181654 bp Feature: domain Description: DEXXQc_SF1 Location: 181054-181654 bp Feature: domain Description: DEXXQc_SF1 Location: 182491-183241 bp Feature: domain Description: DEXXQc_SF1 Location: 182491-183 241 bp Feature: domain Description: SF1_C_Upf1 Location: 183250-183763 bp Feature: domain Description: SF1_C_Upf1 Location: 183 250-183 763 bp Feature: domain Description: MTES_1575 Location: 183913-184201 bp Feature: domain Description: MTES_1575 Location: 183 913 -184201 bp Feature: domain Description: DUF3320 Location: 184381-184525 bp Feature: domain Description: DUF3 3 20 Location: 1843 81-184525 bp Feature: gene Location: 185044-186843 bp Feature: domain Description: rpsA Location: 185113-186727 bp Feature: domain Description: rpsA Location: 185113 -186727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), SF1_C_Upf1 (cd18808), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: KQ968262.1 Bacteroides thetaiotaomicron strain KLE1254 genomic scaffold Scaffold175, whole genome shotgun sequence (128705 bp)
Overview 1 RT 1: 78029-83370 bp Neighborhood of RT #1 [78029, 87491] RVT-DGRs Laminin_G_3 Laminin_G_3 Feature: gene Location: 78029-78271 bp Feature: gene Location: 78451-78936 bp Feature: gene Location: 78933-80237 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 79143-79821 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7914 3-79821 bp Feature: gene Location: 80563-80757 bp Feature: gene Location: 80754-87491 bp Feature: domain Description: Laminin_G_3 Location: 82215-82293 bp Feature: domain Description: Laminin_G_3 Location: 82215-82293 bp Feature: domain Description: Laminin_G_3 Location: 82944-83370 bp Feature: domain Description: Laminin_G_3 Location: 8294 4 -83370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Laminin_G_3 (pfam13385)