myRT

myRT report for GCA_001578575.1_ASM157857v1

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Seq: KQ968429.1 Bacteroides ovatus strain KLE1656 genomic scaffold Scaffold70, whole genome shotgun sequence (574749 bp)
Overview 1 RT 1: 455127-466712 bp Neighborhood of RT #1 [455127, 466828] RVT-Retrons DUF4011 DEXXQc_SF1 DEXXQc_SF1 TIGR00376 MTES_1575 DUF3320 rpsA Feature: gene Location: 455127-455288 bp Feature: gene Location: 455428-457635 bp Feature: gene Location: 457840-458970 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 458161-458704 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4581 61 -458704 bp Feature: gene Location: 458972-464929 bp Feature: domain Description: DUF4011 Location: 460202-460715 bp Feature: domain Description: DUF401 1 Location: 460202-46071 5 bp Feature: domain Description: DEXXQc_SF1 Location: 461054-461915 bp Feature: domain Description: DEXXQc_SF1 Location: 461 054-461 91 5 bp Feature: domain Description: DEXXQc_SF1 Location: 462482-463241 bp Feature: domain Description: DEXXQc_SF1 Location: 462482-463241 bp Feature: domain Description: TIGR00376 Location: 463373-463760 bp Feature: domain Description: TIGR00376 Location: 463373-463760 bp Feature: domain Description: MTES_1575 Location: 463913-464198 bp Feature: domain Description: MTES_1 575 Location: 46391 3-4641 98 bp Feature: domain Description: DUF3320 Location: 464438-464579 bp Feature: domain Description: DUF3320 Location: 464438-464579 bp Feature: gene Location: 465026-466828 bp Feature: domain Description: rpsA Location: 465095-466712 bp Feature: domain Description: rpsA Location: 465095-46671 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, DUF4011 (pfam13195), DEXXQc_SF1 (cd18043), TIGR00376 (DNA helicase, putative), MTES_1575 (pfam18741), DUF3320 (pfam11784), rpsA (TIGR00717)

Seq: KQ968456.1 Bacteroides ovatus strain KLE1656 genomic scaffold Scaffold159, whole genome shotgun sequence (491611 bp)
Overview 1 RT 1: 83789-87321 bp Neighborhood of RT #1 [83789, 87321] DUF1566 Avd_like RVT-DGRs Feature: gene Location: 83789-84598 bp Feature: domain Description: DUF1566 Location: 84320-84569 bp Feature: domain Description: DUF1566 Location: 8432 0-84569 bp Feature: gene Location: 84745-85152 bp Feature: domain Description: Avd_like Location: 84778-85087 bp Feature: domain Description: Avd_like Location: 84778-85087 bp Feature: gene Location: 85167-86588 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85542-86328 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 85542 -8632 8 bp Feature: gene Location: 86551-86829 bp Feature: gene Location: 87034-87321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs

Seq: KQ968397.1 Bacteroides ovatus strain KLE1656 genomic scaffold Scaffold11, whole genome shotgun sequence (230204 bp)
Overview 1 RT 1: 93108-99598 bp 2 RT 2: 136329-145791 bp Neighborhood of RT #1 [93108, 99621] Bac_Flav_CT_G Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_G Neighborhood of RT #2 [136329, 145791] Laminin_G_3 Laminin_G_3 RVT-DGRs Feature: gene Location: 93108-93281 bp Feature: domain Description: Bac_Flav_CT_G Location: 93111-93267 bp Feature: domain Description: Bac_Flav_CT_G Location: 93 111-93 267 bp Feature: gene Location: 93288-93566 bp Feature: domain Description: Bac_Flav_CT_G Location: 93306-93564 bp Feature: domain Description: Bac_Flav_CT_G Location: 93 3 06-93 564 bp Feature: gene Location: 93644-95455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93908-94730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 908-9473 0 bp Feature: domain Description: Intron_maturas2 Location: 94805-95120 bp Feature: domain Description: Intron_maturas2 Location: 94805-95120 bp Feature: domain Description: HNHc Note: nucleases Location: 95276-95426 bp Feature: domain Description: HNHc Note: nucleases Location: 95276-95426 bp Feature: gene Location: 96002-96682 bp Feature: domain Description: Bac_Flav_CT_G Location: 96128-96668 bp Feature: domain Description: Bac_Flav_CT_G Location: 96128-96668 bp Feature: gene Location: 96672-98480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96936-97758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9693 6-97758 bp Feature: domain Description: Intron_maturas2 Location: 97827-98139 bp Feature: domain Description: Intron_maturas2 Location: 97827-9813 9 bp Feature: domain Description: HNHc Note: nucleases Location: 98313-98454 bp Feature: domain Description: HNHc Note: nucleases Location: 983 13 -98454 bp Feature: gene Location: 98488-98988 bp Feature: gene Location: 99046-99621 bp Feature: domain Description: Bac_Flav_CT_G Location: 99049-99598 bp Feature: domain Description: Bac_Flav_CT_G Location: 99049-99598 bp Feature: gene Location: 136329-143066 bp Feature: domain Description: Laminin_G_3 Location: 137790-137868 bp Feature: domain Description: Laminin_G_3 Location: 13 7790-13 7868 bp Feature: domain Description: Laminin_G_3 Location: 138519-138945 bp Feature: domain Description: Laminin_G_3 Location: 13 8519-13 8945 bp Feature: gene Location: 143063-143257 bp Feature: gene Location: 143583-144887 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 143793-144471 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 143 793 -144471 bp Feature: gene Location: 144884-145369 bp Feature: gene Location: 145549-145791 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_G (TIGR03783), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Laminin_G_3 (pfam13385), RVT-DGRs

Seq: KQ968401.1 Bacteroides ovatus strain KLE1656 genomic scaffold Scaffold17, whole genome shotgun sequence (329244 bp)
Overview 1 RT 1: 209397-213346 bp Neighborhood of RT #1 [209397, 213346] RVT-DGRs Feature: gene Location: 209397-210842 bp Feature: gene Location: 211051-211170 bp Feature: gene Location: 211184-212212 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211391-212069 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 211391-212069 bp Feature: gene Location: 212196-213011 bp Feature: gene Location: 213026-213346 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs