myRT

myRT report for GCA_001580105.1_ASM158010v1

Download annotations/find similar RTs

Seq: KQ970988.1 Bacteroides fragilis strain KLE1257 genomic scaffold Scaffold195, whole genome shotgun sequence (416563 bp)
Overview 1 RT 1: 30390-35497 bp Neighborhood of RT #1 [30390, 35529] HTH_17 RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like AAT_like Feature: gene Location: 30390-30731 bp Ori: KXU46249.1 Feature: domain Description: HTH_17 Location: 30561-30705 bp Feature: domain Description: HTH_1 7 Location: 30561 -30705 bp Feature: gene Location: 31282-31551 bp Feature: gene Location: 31575-32423 bp Ori: KXU46251.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31734-32256 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 734-32256 bp Feature: gene Location: 32432-33655 bp Ori: KXU46252.1 Feature: domain Description: Arm-DNA-bind_5 Location: 32471-32732 bp Feature: domain Description: Arm-DNA-bind_5 Location: 32471 -32732 bp Feature: domain Description: Phage_int_SAM_5 Location: 32771-33074 bp Feature: domain Description: Phage_int_SAM_5 Location: 32771 -33074 bp Feature: domain Description: INTN1_C_like Location: 33125-33614 bp Feature: domain Description: INTN1 _C_like Location: 331 25-3361 4 bp Feature: gene Location: 34213-35529 bp Ori: KXU46061.1 Feature: domain Description: AAT_like Location: 34354-35497 bp Feature: domain Description: AAT_like Location: 34354-35497 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_17 (pfam12728), RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), AAT_like (cd00609)

Seq: KQ971004.1 Bacteroides fragilis strain KLE1257 genomic scaffold Scaffold385, whole genome shotgun sequence (153915 bp)
Overview 1 RT 1: 125476-129562 bp Neighborhood of RT #1 [125476, 129681] NHL 7WD40 RVT_N RVT-GII RVT-GII HTH_28 Feature: gene Location: 125476-126843 bp Feature: gene Location: 126840-127895 bp Ori: KXU40486.1 Feature: domain Description: NHL Location: 127062-127428 bp Feature: domain Description: NHL Location: 12 7062 -12 742 8 bp Feature: domain Description: 7WD40 Location: 127479-127860 bp Feature: domain Description: 7WD40 Location: 12 7479-12 7860 bp Feature: gene Location: 128745-129095 bp Ori: KXU40487.1 Feature: domain Description: RVT_N Location: 128748-128946 bp Feature: domain Description: RVT_N Location: 12 8748-12 8946 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129000-129069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9000-12 9069 bp Feature: gene Location: 129073-129270 bp Ori: KXU40488.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129076-129268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 9076-12 92 68 bp Feature: gene Location: 129243-129392 bp Feature: gene Location: 129391-129681 bp Ori: KXU40489.1 Feature: domain Description: HTH_28 Location: 129415-129562 bp Feature: domain Description: HTH_2 8 Location: 12 9415-12 9562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL (pfam01436), 7WD40 (sd00039), RVT_N (pfam13655), RVT-GII, HTH_28 (pfam13518)

Seq: KQ970995.1 Bacteroides fragilis strain KLE1257 genomic scaffold Scaffold235, whole genome shotgun sequence (448317 bp)
Overview 1 RT 1: 21462-28193 bp Neighborhood of RT #1 [21462, 28240] SLATT_5 COG2865 RVT-UG5 Gph LbH_MAT_GAT Feature: gene Location: 21462-22190 bp Ori: KXU43329.1 Feature: domain Description: SLATT_5 Location: 21588-22155 bp Feature: domain Description: SLATT_5 Location: 21588-22155 bp Feature: gene Location: 22351-23730 bp Ori: KXU43330.1 Feature: domain Description: COG2865 Location: 22363-23719 bp Feature: domain Description: COG2865 Location: 223 63 -23 719 bp Feature: gene Location: 23735-26737 bp Ori: KXU43331.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24263-24749 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 24263 -24749 bp Feature: gene Location: 27001-27639 bp Ori: KXU43332.1 Feature: domain Description: Gph Location: 27004-27631 bp Feature: domain Description: Gph Location: 27004-2763 1 bp Feature: gene Location: 27617-28240 bp Ori: KXU43333.1 Feature: domain Description: LbH_MAT_GAT Location: 27656-28193 bp Feature: domain Description: LbH_MAT_GAT Location: 27656-28193 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), COG2865 (Predicted transcriptional regulator, contains HTH domain ), RVT-UG5, Gph (COG0546), LbH_MAT_GAT (cd03357)

Seq: KQ970984.1 Bacteroides fragilis strain KLE1257 genomic scaffold Scaffold179, whole genome shotgun sequence (311131 bp)
Overview 1 RT 1: 196547-203284 bp Neighborhood of RT #1 [196547, 203284] RNase_Z rpsA RVT-Retrons Feature: gene Location: 196547-197461 bp Ori: KXU46533.1 Feature: domain Description: RNase_Z Location: 196562-197453 bp Feature: domain Description: RNase_Z Location: 196562-1974 53 bp Feature: gene Location: 197611-199404 bp Ori: KXU46534.1 Feature: domain Description: rpsA Location: 197689-199297 bp Feature: domain Description: rpsA Location: 197689-199297 bp Feature: gene Location: 199546-200658 bp Ori: KXU46535.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199861-200410 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199861-2004 10 bp Feature: gene Location: 200865-203021 bp Feature: gene Location: 203144-203284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons